Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 512 / 6e-179 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 413 / 3e-140 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 405 / 5e-137 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008823 [exp] 528 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10038109 [exp] 521 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 517 / 1e-180 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10034707 [exp] 424 / 1e-144 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 419 / 4e-142 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 415 / 7e-141 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 409 / 3e-138 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 394 / 8e-133 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 392 / 7e-132 AT5G07830 528 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024200 [exp] 590 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 563 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G121500 [exp] 553 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 401 / 1e-135 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 384 / 9e-129 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001923 pacid=23175269 polypeptide=Lus10001923 locus=Lus10001923.g ID=Lus10001923.BGIv1.0 annot-version=v1.0 ATGGAGACTGTGCTCTGCTCTGGCAATGTCGTCCCAGCGAGGAATCTCTGCTCTGCAGTGCAAGCTATCATACTAGAAACTGCCGTTGCTGCTGCCGGGT CTCTTCTTTGCTCGCTTCTTTGCTCGCTTCTGATGCTGGGCTCTGTGAATGGACCTCATCATCTCTTACCCACCCTGTCTGGAGCAGTTGAAGGCTCAAT CACAGTGGCGGATTCGCAGAGCATCATCAATGGCATTAAACAAGAAGAAGAAGAAGGGAGCGTGTTCATCAATGGAAGCCGAAGAATCGGAAGAACAGAC TCTGATTTTGTATGCGCGACTTTGGACTGGTGGCCTCCTGAGAAATGCGGCTATGGAACTTGCAGCTGGGGATCAGCCTCTCTTCTTAACCTGGATCTTT CAAATCCAATATTACTTAACGCCGTTAAAGCTTTCTCTCCTCTGAAGATTAGATTGGGAGGCACTCTGCAAGACATAGTCCTATACGAGACTCAAGGGCA AACTTGCCATCCTACATTCCTCAAGAACTCTTCTCAACTCTTTGGATTCTCCCATGGCTGCCTGCCCATGTCCAGATGGGATGAACTCAACACTTTCTTC AGAAAAGCTGGGTCGGCTGTTGTGTTCGGGCTGAACGCACTGAACGGCAGGACGATAGCTTCTTCTTCTGATCGTCCTGCGAAAGGAGCCTGGAACTCGA CCAACGCCGAAGCTCTGATAAGATATACTGTGAACAAAGGGTTTACAGTTGTTGGTTGGGAGCTTGGAAATGAGCTTAGTGGGAGTGGAGTTGGAACAAA CGTGGCACCTGACCAATATGCATTTGATGTAACCAATCTGCACAGCATCATACAGACAGTTTATGCTGGCTTCAGGAAGAAGCCGCTGGTTATAGCACCC GGAGGGTTTTACGATGCGAACTGGCTCGCAGAATTCGTGAAGAGAACGCCGAAAGACTCCCTTGAGGTTGTTAGTCACCACATCTACAACCTTGGACCAG GTGTTGATACTCACTTGATTGACAAGATCCTAGATCCGACGTACCTCGATGGTAGTTTTTCGCCTTTCAGCGGACTCCAAGGTGTTTTGAAGAGTGCCGG GAGTCCAGCTGTTGCCTGGGTTGGTGAGGCAGGAGGTGCGTACAACAGTGGCCGCAATCTTGTCACGAATGCGTTTGTGTTCAGTTTCTGGTACTTGGAC CAGTTAGGAATGGCAGCATCTTACGACACCAAAACTTACTGTCGGCAGTCATTAGTCGGAGGCAATTACGGCCTTCTCGACACGACCACCTTCGTTCCGA ACCCAGACTACTACAGTGCACTCTTGTGGCACCGTTTGATGGGAAGAACTGTGCTCCCCGCGAGTTTCTCCGGAACCAAAAAGATACGCGCTTATGCTCA CTGTTCAAAGACATATGTAAGTAAAGTCAACAACTGA
AA sequence Show only first row Show all	>Lus10001923 pacid=23175269 polypeptide=Lus10001923 locus=Lus10001923.g ID=Lus10001923.BGIv1.0 annot-version=v1.0 METVLCSGNVVPARNLCSAVQAIILETAVAAAGSLLCSLLCSLLMLGSVNGPHHLLPTLSGAVEGSITVADSQSIINGIKQEEEEGSVFINGSRRIGRTD SDFVCATLDWWPPEKCGYGTCSWGSASLLNLDLSNPILLNAVKAFSPLKIRLGGTLQDIVLYETQGQTCHPTFLKNSSQLFGFSHGCLPMSRWDELNTFF RKAGSAVVFGLNALNGRTIASSSDRPAKGAWNSTNAEALIRYTVNKGFTVVGWELGNELSGSGVGTNVAPDQYAFDVTNLHSIIQTVYAGFRKKPLVIAP GGFYDANWLAEFVKRTPKDSLEVVSHHIYNLGPGVDTHLIDKILDPTYLDGSFSPFSGLQGVLKSAGSPAVAWVGEAGGAYNSGRNLVTNAFVFSFWYLD QLGMAASYDTKTYCRQSLVGGNYGLLDTTTFVPNPDYYSALLWHRLMGRTVLPASFSGTKKIRAYAHCSKTYVSKVNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	0	1
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	1.0	0.9124
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	3.2	0.8762
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	4.2	0.8739
AT3G02220			unknown protein		Lus10043249 [exp]	4.6	0.8714
AT2G24970			unknown protein		Lus10026900 [exp]	5.0	0.8364
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	6.8	0.8824
AT5G51170			unknown protein		Lus10035151 [exp]	7.7	0.8560
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	8.1	0.8541
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	8.8	0.8498
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	9.5	0.8777

Compare expression of checked genes

Lus10001923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.