Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 983 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 977 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 904 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT5G27030 664 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 629 / 0 TPR2 TOPLESS-related 2 (.1) AT2G25420 183 / 1e-47 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 58 / 2e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G04940 50 / 1e-05 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 49 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 48 / 4e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001951 [exp] 1882 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 934 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10019401 [exp] 855 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011481 [exp] 758 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 676 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 670 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10020668 [exp] 646 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 645 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10011905 [exp] 606 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023900 [exp] 947 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G128000 [exp] 936 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 905 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G023800 [exp] 808 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G258100 [exp] 766 / 0 AT1G80490 1211 / 0.0 TOPLESS-related 1 (.1.2) Potri.003G030000 [exp] 741 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G257900 [exp] 738 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 656 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 548 / 2e-177 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.001G200500 [exp] 453 / 3e-141 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001924 pacid=23175289 polypeptide=Lus10001924 locus=Lus10001924.g ID=Lus10001924.BGIv1.0 annot-version=v1.0 ATGTCGACTCTCTGTAAGGAGCTGGTCTTCTTGATCCTGCAGTTCCTAGAAGAAGAAGGTTGGAAAGATGCTGCTAGAGCGCTTGAGCGGAATAGCGGGT ATTTCTTCAACATGGAGCATTTCGAGGAATTGGTTCTGAAAGGAGACTGGGTTGGGGCTGAGGATTATATTTCCGGGTTCACCAAGTTTGGTGACAATAA GCACTCAACCAAGATCTTTTTTGAAATGAGGAAGCATAATTTCCTTGAGGCATTAGATAACAATGACAGAGCCAAGGCTTTAGACATTCTTGTCAAGGAT CTGAAGGTTTTTGCCCCTGAAAACCAGGAGCTATTGAAGGAATTGACGCAGCTTTTGATCTTAGACAACTTAAGGGAGCATGGGTCACTCTCGATGTATG GAGATACTGAAATTGCAAGAGCAATTGTGATGCGAGAACTCCAGAAACTCATCAGAGCGAATCCCATCTTTCAGGGAAAAGTGGATTTTCCCTGCATCCG AGGTCATAGGCTACGTCGCATTGTAAACCAGAGCTTGAATTGGCAGCATTTACAATGTAAAATTCCCCAACCCGAGCCTAATATTAGAACTCTTTTCGTG GATCATGTCTGTTCACCTCCGGATGAACATATACCTTTGGCTGTGAATGCTGTTATTTCTCAGTCTACTTCTGCTAGTTTGACATCAACTGTTACTGACT CTGGAATCTCTGGCACCACTTCGTGTCCTGGTACTAAACTTCATATCCTTGATTTTTGTCTCTTGATTGAGCTTTACTGTTTTATTGTTGTGGAAAAGTA TGCTCTAGTGATATCAAGTTCTTGGTACTTCCCCATGATGAATATAGATGGTTCTGAGGCGACTGACTTTGCATCCAAAAAAGAGTTGTCTGGTACTGTT GATAAGGAAACACAAAATGTCACCCCCTCTGGTCAAGCTTCTCTGATCTCTCCTCTTGGTTTCTGTAAGAATCATATGGATAACAGTGTAGTTGGGAATT GTGGACTGACAAGCACCATTGACTTGCCAACTATTGTCGCAAGAACACTGACTGAAGAATCTTCTCCAACAAGCATGGACTTTCATCCTGTTCAGCATAC TCATCTACTAGTTGGAACCAACACGGGGGATATAGATTTGTGGGATGTTGCTTCTGGTGAAAAGCTGGTCACAAGTAACTTCAAAGTTTGGGATATAAGT GCCTGCACAATGGTTTTCAAGACTGCACTGGTCAAAGATCCGCATGTCGCTGTCAACCGTGTTACTTGGAGCCAGGATGGTTCTTCTTTGGGGGTTGCAT ATTCAAAACACATTGTGCACACATATGCTTATCATGGTGGCTCTGATATACGGCAGCAATTAGAAATTGATGGTCATATAGGTGGTGTCAATGATCTTGC ATTTGCCAACCCAAATAAACTAGCTCTGATCATAACGTGTGGTGATGACAGAACAATTCAGGCATGGGACGTGACCGACGGTAGGAGGGTGTATAAATTT GAAGGCCATCACTCATCAGTGTATTCACTCTGCCCCCACAGCAAGAACAGCGTTCATTTCTTTTTTTCAACTTCAGTGGATGGGAACATAAAAGCATGGC TATATAGTGATTCGGATCCCAGAGTTGATTATGATGCTCCTGGTCTGGCAAGTACATCAATGGCTTACTCCACTGATGGTAGAAGGCTTTTCTCTTGTGG AACCAGTAAATCTGGGGAGTCATTCCTTGTTGAATGGGATGAAAGTGAAGGGGCTATCAAAAGAAACTACCACGGATTGCGGAAGAGTTCTTTGGGTGCA GTTAAGTTTGACATAATGAAGAATCAGTTTTTGGCCGCTGGCAATGAGCATCTGATTAAATTTTGGAGTTTGAACAATGATGTTCCCATGACAGCTATCG ATGCAGAGGGAGACTTACCTGAAAATCCACATATCCGATTCAACAAGGACAGCACTCTCCTGGCTGTTTTTGCAAACGAAAATAAAATTAAGATCTTGGC AAGCAATAGCGGTCTTCAGTTGCTTGGTATATGCAGAGAGCAAGGACATTTAGTAGACACGGAGGCTGTTAGAAATACATCTCTTGAAATTAACAGACCA CCTCGTTTCAAAGCCCCAGTGCTCCCCTGCCATGTGAAAGTAGAGAAGATATCAAAATTGATTTATGGGAGTTCAGGTAATGCTATTTTGGCATTAGCAT CGAACGGCACTCATTTGTTATGGAAATGGCCAGTTAACCACCGCAATTTGAGTGGGCAGGTAACTACTGAAGTTCTTCCACAACTATGGAAACCAAAGAA CTCCTCAGCGACGATGAAGAATGATCTGACTGAAAATCCTGAGGCTTTACCATGCTTTGCATTGTCAAAGAACGATTGCTATCTCCTATCAGCATCGGGC GGGAAAATTTCCCTTTTCAATATGTTAACATTCAGGACTTTATCATTCGTCGCGCCATCAAAAGCAGCGGCTACATGCCTTGCTTTCCACCCGAAAGATA ACAACATTATTGCTGTCGGAAGGGACAACTGCACAATTCTCATCCATAATGTCCGTTTGGACAAGTGTATTAATGTACTCTATGGCCATACGGGAAGGAT CTCTGGGCTGGCCTTCTCAATTTCTCTCAATAAAATGGTATCTTCTGGAGCAGATGCTCAGATTACTATATGGAATGCCGAAAGTTGGGAAAGAGAAGGA AGCAGAATCTTAAAGATTCCAGATAGTCTCAAGTCAGACTCAGATACGTACGTCGAATTTCACCCCAACCAAGCTCGATTCCTTGCAGGGCACAGAGCCT ATATGGGAGTCTTTGTTGCCGCCCACAACTTGGAATGTGTTGTGGAGTGGATTCCGGGAGGCTCGCTCCGTATTTCTCAGGCAACATTTTCATGCGATGG CCGCAAAATATATGTCGGGCTTATGGATGGGAGTGTAGCAATATATGCTTCTTCATCTCTTGAGTTCCGTTGTTGGATTCCTACTAGGGTGGGTGAGTAT CCAGTGAGCATCGCAGCTCACCCTCGGAAACCGCACCAGTTTGCAGTAGGATACACCGGTGGTGAAGTTGCGGTGGTTGAGCCTCAAGGTCCTGATGCCG AATCGTGGATGAACGATGACAACGATGAGGTTTCGACAGCAACCAACAAAACCGGCTGTCGAATTAAGTTGATCAAGACAGACAAATAA
AA sequence Show only first row Show all	>Lus10001924 pacid=23175289 polypeptide=Lus10001924 locus=Lus10001924.g ID=Lus10001924.BGIv1.0 annot-version=v1.0 MSTLCKELVFLILQFLEEEGWKDAARALERNSGYFFNMEHFEELVLKGDWVGAEDYISGFTKFGDNKHSTKIFFEMRKHNFLEALDNNDRAKALDILVKD LKVFAPENQELLKELTQLLILDNLREHGSLSMYGDTEIARAIVMRELQKLIRANPIFQGKVDFPCIRGHRLRRIVNQSLNWQHLQCKIPQPEPNIRTLFV DHVCSPPDEHIPLAVNAVISQSTSASLTSTVTDSGISGTTSCPGTKLHILDFCLLIELYCFIVVEKYALVISSSWYFPMMNIDGSEATDFASKKELSGTV DKETQNVTPSGQASLISPLGFCKNHMDNSVVGNCGLTSTIDLPTIVARTLTEESSPTSMDFHPVQHTHLLVGTNTGDIDLWDVASGEKLVTSNFKVWDIS ACTMVFKTALVKDPHVAVNRVTWSQDGSSLGVAYSKHIVHTYAYHGGSDIRQQLEIDGHIGGVNDLAFANPNKLALIITCGDDRTIQAWDVTDGRRVYKF EGHHSSVYSLCPHSKNSVHFFFSTSVDGNIKAWLYSDSDPRVDYDAPGLASTSMAYSTDGRRLFSCGTSKSGESFLVEWDESEGAIKRNYHGLRKSSLGA VKFDIMKNQFLAAGNEHLIKFWSLNNDVPMTAIDAEGDLPENPHIRFNKDSTLLAVFANENKIKILASNSGLQLLGICREQGHLVDTEAVRNTSLEINRP PRFKAPVLPCHVKVEKISKLIYGSSGNAILALASNGTHLLWKWPVNHRNLSGQVTTEVLPQLWKPKNSSATMKNDLTENPEALPCFALSKNDCYLLSASG GKISLFNMLTFRTLSFVAPSKAAATCLAFHPKDNNIIAVGRDNCTILIHNVRLDKCINVLYGHTGRISGLAFSISLNKMVSSGADAQITIWNAESWEREG SRILKIPDSLKSDSDTYVEFHPNQARFLAGHRAYMGVFVAAHNLECVVEWIPGGSLRISQATFSCDGRKIYVGLMDGSVAIYASSSLEFRCWIPTRVGEY PVSIAAHPRKPHQFAVGYTGGEVAVVEPQGPDAESWMNDDNDEVSTATNKTGCRIKLIKTDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	0	1
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	3.5	0.8492
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	3.7	0.8081
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	7.2	0.8439
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	7.4	0.8237
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	8.9	0.7893
AT5G24320			Transducin/WD40 repeat-like su...		Lus10007783 [exp]	9.6	0.7770
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	9.9	0.7932
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	11.5	0.8212
AT5G14720			Protein kinase superfamily pro...		Lus10014542 [exp]	13.6	0.8303
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	17.9	0.8062

Compare expression of checked genes

Lus10001924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.