Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25280 461 / 2e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001950 [exp] 541 / 0 AT2G25280 486 / 2e-175 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023700 [exp] 473 / 2e-170 AT2G25280 429 / 7e-153 unknown protein Potri.006G258200 [exp] 459 / 7e-165 AT2G25280 439 / 5e-157 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0283 [flax] [poplar] LigB PF01875 [flax] [poplar] Memo Memo-like protein
Representative CDS sequence Show only first row Show all	>Lus10001925 pacid=23175287 polypeptide=Lus10001925 locus=Lus10001925.g ID=Lus10001925.BGIv1.0 annot-version=v1.0 ATGGAGATCGTCAGAAGAGCATCTCATGCTGGCTCATGGTACACCGATAATCCGAGAGAGCTAGAAGAAGAGCTTGATGGGTGGCTGAATGCTGCTGGAC TGCCGAAATCACCTGACGTTCGTGGAGTCATTGCTCCGCATGCAGGTTACTCATATTCTGGCCGTGCAGCTGCTTATGCATTTGGAAATATAGATCCCAC CAACATTTCTCAGATATTCCTTCTCGGCCCATCTCACCACTTTTATACTCCCAAGTGTGCTCTTTCAAGAGCAACAGTTTACAAGACACCAATTGGGGAC TTGCCTATTGACCAGGAAGTAATTGAGGAGCTTAAGGCTACAGGTAAATTCGAGTTGATGGATCTCCGAGTCGACGAGGCAGAGCATAGCATGGAGATGC ACTTACCTTATCTTGCCAAAGTCTTTAAAGGGCACCAAGTGAAGGTTGTGCCGATTCTGGTTGGTGCTTTAAATGCTGAGAACGAAGCCATGTACGGGAA GTTATTAGCAAACTACATAGATGACCCCAAAAACTTCTTTTCGGTATCTTCAGATTTCTGCCACTGGGGTACACGGTTCAATTATACACACTATGACCGA GAACACGGTGCAATATACAAATCTATCGAGGCACTGGATAAGATGGGGATGGATATAATCGAGATGGGAGACCCGGATTCGTTCAAGAAGTATCTGCTGG AGTATGACAATACCATCTGTGGACGTCACCCGATTGGTGTTTTCCTCCATATGCTTAAGAATTGCTCAGCAAAGATTAAGATAAACTTCCTCCGTTATGA ACAGTCGAGCCAGTGCAAGACTATGAAGGATAGTAGCGTCAGCTATGCATCTGCGGCAGCAAAGCTGGACTGA
AA sequence Show only first row Show all	>Lus10001925 pacid=23175287 polypeptide=Lus10001925 locus=Lus10001925.g ID=Lus10001925.BGIv1.0 annot-version=v1.0 MEIVRRASHAGSWYTDNPRELEEELDGWLNAAGLPKSPDVRGVIAPHAGYSYSGRAAAYAFGNIDPTNISQIFLLGPSHHFYTPKCALSRATVYKTPIGD LPIDQEVIEELKATGKFELMDLRVDEAEHSMEMHLPYLAKVFKGHQVKVVPILVGALNAENEAMYGKLLANYIDDPKNFFSVSSDFCHWGTRFNYTHYDR EHGAIYKSIEALDKMGMDIIEMGDPDSFKKYLLEYDNTICGRHPIGVFLHMLKNCSAKIKINFLRYEQSSQCKTMKDSSVSYASAAAKLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25280			unknown protein		Lus10001925 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	3.5	0.8820
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	4.0	0.8762
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	5.0	0.8835
AT2G42760			unknown protein		Lus10005429 [exp]	6.5	0.8829
AT3G27210			unknown protein		Lus10035217 [exp]	7.2	0.8579
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	7.7	0.8706
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	12.7	0.8670
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	13.6	0.8086
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	16.9	0.8413
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	17.3	0.8481

Compare expression of checked genes

Lus10001925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.