Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08550 662 / 0 ILP1 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) AT5G09210 290 / 9e-87 GC-rich sequence DNA-binding factor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001949 [exp] 1346 / 0 AT5G08550 848 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002600 [exp] 823 / 0 AT5G08550 692 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Potri.006G020200 [exp] 99 / 1e-23 AT5G08550 73 / 2e-15 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Potri.006G020400 [exp] 95 / 2e-22 AT5G08550 69 / 3e-14 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07842 [flax] [poplar] GCFC GC-rich sequence DNA-binding factor-like protein
Representative CDS sequence Show only first row Show all	>Lus10001926 pacid=23175274 polypeptide=Lus10001926 locus=Lus10001926.g ID=Lus10001926.BGIv1.0 annot-version=v1.0 ATGAGCTCCTCCAACAGCAAATCGCGAAACTTTCGCCGTCGGCTGGACGACGAAGACTCTAGCTCAACTGACCCTTCCGCCGCCATCCCTTCACCGCCCA CCGTCCGCAGACCTCAACCACCTTCTTCCTCAGCTTCCAAGCCTAAAAAGCTCCTTAGTTTCGCCGACGACGAAGGCGATGAAGGTGCTGTAACTCCTCT CAATCATTCTTCTCTCTCTAAGTCTTCTTCTTCTTCTAGCCGGCGAAAGCCTCCTCCTCCTTCTTCTTCCGGTTCTTCTTCTAGACTCGGCAGGCCCAGT TCTGCTCACAAGCTCACCGCATCCAGAGACCGAGCTCCTCTTAGCTCCTCCGCTACGACTTCCAATGTTCTTCCTCAGGCCGGAACTTACACCAAAGAAG CCATTCTCGAGCTTCAGAAGAACACCCGCACTTTAGCCAAACCTTCCCCCAAGCCTTCTCCTTCCTCTGAGCCTAGGATCATCCTTAGAGGCCTTCTCAA GCCTGCTGCTCCATCCCCGAATCAAACCCAAACTCACCCCAACTCTGTCATAGATGATGATGATGATAATGATGACGGAGATGTGGCTGACGCCAATACT CGATTGGCATCAATTGGGTTGATGAAATCCGCATCCCATGATGACTATCCTGATCCTGAAACCATTAGGAAGATCAGAGCCGAGAGAGAAAAGAAGAGAC AGTCTAGAGCTTCTGCTGCTGACTTCATTCCCCTTAATGGACCTTCTCACACTGAAGCTGAAGGGTCCAGTGACGATGACGAGCTTGAGCTTAGAACTCG TGTTGCTATGGTTGGCAAAAAAGAAAGCAAAACTCATGGCGTCTTTGAGGATGTTGACTCTGGTACTGCTGCTTCTGCCAGATATATGAATGCTCAGACC TCGGTGAATGAGATTGCTGATGAAGTTGATGATGAGGATGAAGAGGACAAGATTTGGGAAGAAGAGCAGTTTAGGAAGGCCTTGGGGAAGAGAATGGATG ATGGTTCTGCTACTACTCGAGTCGTTTCTGGTGGTGTAGGTGGTACTAATGCTACTGCCACGATGCAGCAGCAGCCTCCATTGCAGCATAGGGCCAGCAG TGCATATTCAAACATTGGAGGGGGTCTTGGGGCATCTCAACGGCTGGACACCTTGACCATTCAGCAACAATCTGAGATTGCTTTGAAGGCATTGCAGGAT AATTCCAGGAAGCTTCAGGAATCTCATGATAGAACTGTTTCAACACTAGCAAAAACTGACGAGAACTTATCTGCCTCGCTGGATAATATTACTTCTCTTG AAGCCTCGTTGTCTGCTGCTGGTGAGAAGTTCATCTTTATGCAAAGTCTCCGTGACTTTGTTTCTGTTTTATGTGAATTTTTGCAGCATAAAGCTCCATT CATAGAGGAGCTTGAAGAGCGAATGCAGAAGGTTCAAGAGAAACGGGCAGCAGCTGTTTTGGAAAGAAGAAGTGCTGATAATGATGATGAAATGGTGGGG GTAGAGGCCGCTGTTAAAGCAGCAATGTCAGTTTTCAGGGAACGTGGAAATACTGCAATGATGATCGCTACTGCTGCAAGTGCAGCCCAGACTGCTTCAG CTTCTGTGAAAGAGCAAGCTACTCAACCAGAATTAGATGAACTGGGTAGGGATATGAGTAGACAAAAGAATATGGAGATGAAACGGAGGGCTGAAGCACG ACAACGCAGAAGATCCAAGTTTGATTCAAAGAGATTTTCATGCATGGAAGTTGACAACTCTGATCAGAAAATAGAAGGAGAATCAAGCACTGACGAGAGC GAGAGTGAAAGTGAAGCTTACCGGTCTAGTCGCGATATGTGCCTACAAACTGCTGGTCAAATTTTAAGTGATGCTTCCGAAGAATTTTCCCAGTTGCAAT TGGTGAAAGAAAGATTGGAGAATTGGAAAATTAAGTATGCAGCTAGCTACAGAGATGCTTACATGTCACTCAGTATACCAGCACTCTTCTCTCCTTATGT GAGGCTGGAGCTTCTACAGTGGGATCCATTGGACAAGGCTGATTTCTCACACATGAAATGGCATTCTCTGTTATTCGACTATGGTTTACCAGAGGGTGCA TCTGATTTGAATCCCGACGATGCTGACAGTAATCTCGTACCACAACTGGTAGAAAAAGTAGCTATTCCCAAATTGCATCACCAAATCGTCCACTGTTGGG ACACACTTAGTACACTTGAAACGGAGAATGCCGTTGCTGCCACAAGCTTGGTCATCGATTACGTTCCAGCCTCAAGTCAGGCTCTAGCAGAGCTATTAGT TGCAATCCGTACCCGTCTCGCTGATGCTGTAGCTGACATCATGGTTCCAAACTGGGGCTCGCTTGTCCTTAAGGCAGTGCCAAGTGCGGCACAAGTTGCA GCCTATCGTTTTGGAGTGTCTGTCCGTTTGATAAGGAACATCTGCTTGTGGAAGGATATTCTTGCTTTGCCGGTTCTTGAGGAGCTCGCACTTGATGAGC TTTTACGGAGGAAGGTGCTACCCCATGTTCAAAGCATTTCATTGGATGTTCATGATGCTGTTGCCAGAACGGAGAGGATCGTTGCTTCTCTGACTGGAGT GTGGGCAGGTCCAAACGTAACGGGGGATCGCAGTGGCAAGTTGCAGTCAGTGGTGGACTTTGTGGTGTCGCTAGGAAGGGCGTTGGAGAAGAAGCAGGCG GCGTCAAGAGTGAGCGAGGGGGAGAGTAATGGACTTGCGAGACGGTTGACGAAGCTGCTGGTTGAGCTCAACGACTACGACAATGCACGAGGCGTCGCGA AGACCTTTCGGTTGAAGGACGCTTTGTAA
AA sequence Show only first row Show all	>Lus10001926 pacid=23175274 polypeptide=Lus10001926 locus=Lus10001926.g ID=Lus10001926.BGIv1.0 annot-version=v1.0 MSSSNSKSRNFRRRLDDEDSSSTDPSAAIPSPPTVRRPQPPSSSASKPKKLLSFADDEGDEGAVTPLNHSSLSKSSSSSSRRKPPPPSSSGSSSRLGRPS SAHKLTASRDRAPLSSSATTSNVLPQAGTYTKEAILELQKNTRTLAKPSPKPSPSSEPRIILRGLLKPAAPSPNQTQTHPNSVIDDDDDNDDGDVADANT RLASIGLMKSASHDDYPDPETIRKIRAEREKKRQSRASAADFIPLNGPSHTEAEGSSDDDELELRTRVAMVGKKESKTHGVFEDVDSGTAASARYMNAQT SVNEIADEVDDEDEEDKIWEEEQFRKALGKRMDDGSATTRVVSGGVGGTNATATMQQQPPLQHRASSAYSNIGGGLGASQRLDTLTIQQQSEIALKALQD NSRKLQESHDRTVSTLAKTDENLSASLDNITSLEASLSAAGEKFIFMQSLRDFVSVLCEFLQHKAPFIEELEERMQKVQEKRAAAVLERRSADNDDEMVG VEAAVKAAMSVFRERGNTAMMIATAASAAQTASASVKEQATQPELDELGRDMSRQKNMEMKRRAEARQRRRSKFDSKRFSCMEVDNSDQKIEGESSTDES ESESEAYRSSRDMCLQTAGQILSDASEEFSQLQLVKERLENWKIKYAASYRDAYMSLSIPALFSPYVRLELLQWDPLDKADFSHMKWHSLLFDYGLPEGA SDLNPDDADSNLVPQLVEKVAIPKLHHQIVHCWDTLSTLETENAVAATSLVIDYVPASSQALAELLVAIRTRLADAVADIMVPNWGSLVLKAVPSAAQVA AYRFGVSVRLIRNICLWKDILALPVLEELALDELLRRKVLPHVQSISLDVHDAVARTERIVASLTGVWAGPNVTGDRSGKLQSVVDFVVSLGRALEKKQA ASRVSEGESNGLARRLTKLLVELNDYDNARGVAKTFRLKDAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	0	1
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	1.7	0.9617
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	2.0	0.9498
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	3.9	0.9494
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	4.7	0.9233
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	5.0	0.9403
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	7.7	0.9449
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	9.9	0.9316
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	11.5	0.9306
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10034469 [exp]	12.6	0.9280
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	12.7	0.9209

Compare expression of checked genes

Lus10001926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.