Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 626 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 600 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 342 / 6e-106 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 331 / 2e-102 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 76 / 1e-14 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 60 / 4e-09 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G54010 57 / 4e-08 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT2G42580 56 / 6e-08 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 55 / 2e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G25230 53 / 5e-07 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001948 [exp] 1284 / 0 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001947 [exp] 1275 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 791 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 494 / 6e-166 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 492 / 2e-165 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 352 / 6e-110 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 347 / 4e-108 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 70 / 8e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 71 / 2e-12 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258300 [exp] 728 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 705 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 554 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 358 / 1e-112 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 358 / 2e-112 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G100700 [exp] 75 / 1e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 71 / 2e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G105100 [exp] 61 / 3e-09 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.011G111500 [exp] 56 / 6e-08 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.014G149400 [exp] 54 / 2e-07 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10001927 pacid=23175285 polypeptide=Lus10001927 locus=Lus10001927.g ID=Lus10001927.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCAACGGGGAAGAAGACTTCAAATCCTCAATCGCCGAATACTCCGAGAACCCCCAAAACCGACGGTAACGCTAAGCAGCAGCAGCAAAGCA AGCTAGCATCCGAGAAATCTTCCAAAGCCTTTGATGAAGACACGGCAATCTTCATCACCATGGCACAGGAGCTTAAAGAAGAAGGAAACAAGCTCTTCCA GAAGCGTGACCACGAAGGCGCGATGTTGAAGTACGAAAAGGCCGTCAAGCTACTCCCCAACAATCACATCGATGTCGCATCTCTCCACACCAGCATGGCC GGTTGCTATATGCAGATGGGACTCGGTGAGTGTCCTCGAGCTATTAACCAGTGTAATTTGGCGCTGGAGGTTTCTCCTAAATATAGCAAGGCTCTGTTGA AGAGAGCTATCTGTTATGAGTCCTTGAATCGATTGGATTTAGCTTGGAGAGATGTTAATCGTGTTTTGTCCATGGAACCTAGTAATTCATCCGCTCTTGA GGTTTTGGCTTGTGTTAAGAAGACTATGGCTGATCAGGGGTTGAGTTTTGATGAAAATTCCATCTGTTTGGATGATGAGGTTGAGAAGAAGAGTGGTACT GGTGCATCTCGTTTGCGCAAGGTGGTGAAAGAGAAGATCAAGAATAAGAAGAAGAAAGCTGATAAAGCTGAGGTGGTGGAGAAGAAGATGGATGATAAAG AAAAGGTAGCGGTTGTTGAGGTGAAGAAAGCGACTCCTGTCATTAACAAGAAGGATGTGGTTGTGAAGACCAATGATGTGAAGAAAGTGACTGGTAAGAA AGGTATTAAGGAAGAGAAAGCAATTGCCAAGACTGTGAAGTTGGTATTGGGGGAAGATATAAGGTGGGCGCAATTGCCTGCGAATTGTACTGTGGGATTG CTGAGGGATATTGTTGGTGATAGGTTTCCTGGCTTGAGAGGTGCTCTGATTAAATATAAAGATCAAGAAGGTGATTTGGTTACTATAACTACGATGGATG AGTTGAGGTTAGCTGAGGCATCCTGTGGTTCTCAAGGATCATCACTCAAGTTCCACATTGTTGAAGTTAGTTTGGATCTCGAGCCGAGTTACGAGCGACC GAAAGCTGATGAAAATGTAGTACTGAAAGACGAAAAGCCGAGTCATGATGTTGGAAGAAGCAGTGATGTTGAAAAGGGGTCTGCTTCAGTTGATGATTGG ATTATCCAGTTTGCAAGGCTGTTCAAGAACCATGTCGGGTTTGATTCCGATTCTTATTTGGATATTCATGAACTGGGGATGAAATTCTACTCGGAGGCGA TGGAGGATACTGTTACGAGCGAAGAAGCAGTAGAGTTGTTTGATATTGCCGTGGACAGGTTCCAGGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAA TGTTCACATGTCAAGGGCAAGGAAGAGAGTTTCTTTTCCAGAAGATGGATCCAGGGAGACCTTACTGGAACTGATGAAGAGTGCATATGAATGGTCAAAG ACTGAATATAGAAAGGCTGGAGAGAGATATCACTTGGCCCTTAAACTAAAGCCGGATTTTTATGAAAGTCTTTTGGCACTTGGTCAGCAGCAGTTTGAGC AAGCTAAGCTTTGTTGGTACCATGCCACTGGAAGCAAGCTTGACTTAGAGAGTGGGACGTCCGAGGAGGTGCTGGATCTTTACAATAGGGCCGAGGACTG CATGGAGAGAGGTACGCAGATGTGGGAGGAAATGGAGGAGCAGCGCCAAAATGGGATCTCTAAGTTTGACAAGTATAAATCCCAGCTTACGAAATTGGGA TTGGATGGTCTGTTGAAAGATGTGTCGCCTGAAGAAGCTACGGAGCAGGCATCGAATATGAGCTCACAGATAAACCTCTTGTGGGGGACTATGTTGTATG AACGTTCTGTTGTGGAGTACAGGTTGGAGTTACCGACTTGGGAAGAATGTCTGGAAGTTGCCGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCGACAGA TATAGCAGTTATGATCAAGAACCACTGTTCCAATGTTACAGCATTTGACGGTTTGAGCTTCAAAATCGATGAGATAGTGCAAGCATGGAACGAAATGTAC GACGCTAAGAGGTGGGAGATCGGTGTTCCATCTTTTAGGTTGGAACCTTTGTTTCGTCGGCGAACTCCAAAGCTTCATTATATGCTGGAGTCATATTGA
AA sequence Show only first row Show all	>Lus10001927 pacid=23175285 polypeptide=Lus10001927 locus=Lus10001927.g ID=Lus10001927.BGIv1.0 annot-version=v1.0 MGKPTGKKTSNPQSPNTPRTPKTDGNAKQQQQSKLASEKSSKAFDEDTAIFITMAQELKEEGNKLFQKRDHEGAMLKYEKAVKLLPNNHIDVASLHTSMA GCYMQMGLGECPRAINQCNLALEVSPKYSKALLKRAICYESLNRLDLAWRDVNRVLSMEPSNSSALEVLACVKKTMADQGLSFDENSICLDDEVEKKSGT GASRLRKVVKEKIKNKKKKADKAEVVEKKMDDKEKVAVVEVKKATPVINKKDVVVKTNDVKKVTGKKGIKEEKAIAKTVKLVLGEDIRWAQLPANCTVGL LRDIVGDRFPGLRGALIKYKDQEGDLVTITTMDELRLAEASCGSQGSSLKFHIVEVSLDLEPSYERPKADENVVLKDEKPSHDVGRSSDVEKGSASVDDW IIQFARLFKNHVGFDSDSYLDIHELGMKFYSEAMEDTVTSEEAVELFDIAVDRFQEMAALALFNWGNVHMSRARKRVSFPEDGSRETLLELMKSAYEWSK TEYRKAGERYHLALKLKPDFYESLLALGQQQFEQAKLCWYHATGSKLDLESGTSEEVLDLYNRAEDCMERGTQMWEEMEEQRQNGISKFDKYKSQLTKLG LDGLLKDVSPEEATEQASNMSSQINLLWGTMLYERSVVEYRLELPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNVTAFDGLSFKIDEIVQAWNEMY DAKRWEIGVPSFRLEPLFRRRTPKLHYMLESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	1.0	0.8741
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	4.0	0.8561
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	4.6	0.8084
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	6.0	0.7914
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	7.2	0.7635
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	7.7	0.8512
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	8.7	0.8097
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	8.8	0.8085
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	11.4	0.7883
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035188 [exp]	11.4	0.7997

Compare expression of checked genes

Lus10001927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.