Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11090 158 / 2e-48 serine-rich protein-related (.1) AT5G25280 157 / 6e-48 serine-rich protein-related (.1.2) AT5G20370 68 / 4e-14 serine-rich protein-related (.1) AT1G67910 41 / 6e-05 unknown protein AT1G24577 40 / 7e-05 unknown protein AT3G13227 40 / 0.0003 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001946 [exp] 293 / 1e-101 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10039998 [exp] 160 / 2e-49 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 157 / 3e-48 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10006660 [exp] 145 / 2e-43 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 143 / 2e-42 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10008811 [exp] 59 / 1e-11 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 49 / 2e-07 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 40 / 0.0002 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 40 / 0.0002 AT1G67910 48 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023300 [exp] 193 / 2e-62 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G258600 [exp] 185 / 3e-59 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 140 / 1e-41 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.006G060800 [exp] 138 / 7e-41 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 62 / 2e-12 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 55 / 8e-10 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.002G250700 [exp] 44 / 1e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.008G186200 [exp] 40 / 0.0001 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 40 / 0.0002 AT1G67910 82 / 4e-22 unknown protein Potri.018G079200 [exp] 37 / 0.0008 AT1G67910 45 / 9e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001928 pacid=23175275 polypeptide=Lus10001928 locus=Lus10001928.g ID=Lus10001928.BGIv1.0 annot-version=v1.0 ATGGGGATGGATTCAAATTCTAAGAAACCTAGCGGGCCGGTGCTCCGGTCACTATCACCTTCCGCACGGTTTCCGTCTTACGGATCCCGCTCTCACTTGT CTTCTTCCTCCTCAGCCTTCGCTTCTTCCACAAGCTCCGGTTTTTATTCGTCGCCGTCAGCCTTCTTCCGCAGCTCAGCTCCTCTTCAGAGATCCACCTC TCCAACGCGCGTCAATCTCTATTCCTCGAGTCCTCCGTCACCCACCTTCCGTTTCTCCATCGATCGATCCACTTCTCCAAGCCGATCGATTACAGTCGCC ACCAAGCACATCAATCACATCTCCAGCCTCCCTAAGAAGAAGACGTGTATGTGCTCTCCAACGTCGCATCCGGGATCGTTCCGGTGTAGCCTCCACAAGA ACAGCAATCAAAGCAGCCAAGGTGGCAATAGCAGCTCGTACACGCCCAACAGGTTGAACATGAGGAGATCCGCCATGGCGAACTCGGTTGTGAGAATCGG CGGTGTTGAAGGAGACTGGGTGAAAAGAGCTCTGTCTGCCTTGATTCGGCCTTCTTCACATCAGCAGAGGAGGCGTGGGAACTTTCAGCAACGACCGAGC AGGCTCTCCGTCATGTCTAGAGCCGATGAGGGTTCTTAA
AA sequence Show only first row Show all	>Lus10001928 pacid=23175275 polypeptide=Lus10001928 locus=Lus10001928.g ID=Lus10001928.BGIv1.0 annot-version=v1.0 MGMDSNSKKPSGPVLRSLSPSARFPSYGSRSHLSSSSSAFASSTSSGFYSSPSAFFRSSAPLQRSTSPTRVNLYSSSPPSPTFRFSIDRSTSPSRSITVA TKHINHISSLPKKKTCMCSPTSHPGSFRCSLHKNSNQSSQGGNSSSYTPNRLNMRRSAMANSVVRIGGVEGDWVKRALSALIRPSSHQQRRRGNFQQRPS RLSVMSRADEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11090			serine-rich protein-related (....		Lus10001928 [exp]	0	1
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	1.4	0.8222
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	1.7	0.7974
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	4.9	0.8151
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	6.5	0.7877
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	16.0	0.7460
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	17.2	0.7889
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	18.3	0.7591
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	25.8	0.7584
AT2G31305		INH3	inhibitor-3 (.1)		Lus10018105 [exp]	26.4	0.6924
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	28.1	0.7862

Compare expression of checked genes

Lus10001928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.