Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 405 / 6e-136 unknown protein AT2G12400 388 / 3e-129 unknown protein AT1G80540 293 / 3e-92 unknown protein AT1G71110 277 / 4e-86 unknown protein AT5G25250 152 / 2e-40 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G64870 150 / 1e-39 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G25260 147 / 1e-38 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G67550 77 / 9e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001945 [exp] 609 / 0 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 404 / 2e-135 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 389 / 1e-129 AT2G12400 616 / 0.0 unknown protein Lus10013492 [exp] 279 / 8e-87 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 274 / 2e-85 AT1G71110 578 / 0.0 unknown protein Lus10034641 [exp] 265 / 2e-81 AT1G71110 587 / 0.0 unknown protein Lus10038102 [exp] 263 / 2e-81 AT2G25270 468 / 5e-161 unknown protein Lus10014341 [exp] 223 / 8e-66 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 193 / 3e-55 AT2G25270 328 / 4e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023200 [exp] 452 / 5e-154 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 441 / 7e-150 AT2G25270 590 / 0.0 unknown protein Potri.018G120200 [exp] 400 / 1e-133 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 384 / 2e-127 AT2G12400 579 / 0.0 unknown protein Potri.010G115500 [exp] 250 / 1e-75 AT1G71110 646 / 0.0 unknown protein Potri.018G022900 [exp] 153 / 2e-40 AT5G25260 703 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.006G258900 [exp] 151 / 7e-40 AT5G25260 704 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G023400 [exp] 96 / 8e-21 AT5G67550 182 / 3e-51 unknown protein Potri.007G132601 [exp] 92 / 2e-19 AT5G67550 189 / 8e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001929 pacid=23175279 polypeptide=Lus10001929 locus=Lus10001929.g ID=Lus10001929.BGIv1.0 annot-version=v1.0 ATGTACAAAGTAGCCAAGGCATCCGAGTATCTAGCAATTATCGAAGTGGGAATAACTGACATCAAGCTAGCCAAAAAAGCATGGATTTTACCAGTTGGCC AATCCTGCACCCAATTCGACATCTCCCCCGTCAATTACACCTTCGAGGGGATCATCGAAGGCGAGACATGTGTTCTCGCCGCTTCCATGACCATGAAGGA GATCTTCCACGGTACCAAAGAGGTCAAGAAGGAAGTTTTTGACAAGGTTCAGTTTGAGCTCAACCAGTTTCTTCTCATCATTTATAATGCCAATGTCAAG CAGTTGGTTGACGTCCCAGGGTCACCGGCGGCGGCGGAGCTCCCATGGAGGAGGTCAACAGTAGAGATACCCAGCGAACCACCAATGGAACCTTCTTCAT CATCACCACTTGTAGCTTTAGCAGCTGAACGGACTTACAGGAAAGACCCTCTTGATGGCTTCAAACGTTACGATGGTGGCTGGAATATCAGCGACCGCCA TTATTGGGCTTCTGCAGGATTCACAGCAGCTCCACTCTTCCTGGTAGCCTTAATCTGGTTTCTAGGGTTTGGAATCTGTTTACTGCTTGGATGCCTATGT CATTACTGCTTCAAGAAGCAGCTCCATGGCTTTTCTCGAATAGCCTATGCACTCTCCCTCGTTTTCCTTGTCGTCTTCAGCATTGCTGCTATAATTGGTT GTGTTGTGCTGTATAATGGTCAGGGCAAGTTCCATAGAAGCACAACACGGACATTGGAGCGGCTGGCACTTATCGTTGTAGCTGCCATAATGCTTGTCCT AACATTCCTTGGATTGTTGTTCTCCATCTTTGGAATGCAGTCGCTAGTATCCATCCTAGTAGTTCTAGGATGGATACTTGTTGCAGGCACATTCATTCTG TGTGGTATATTCCTCCTGCTTCACAATGTGGCAGGTGATGCTTGTGTTGCAATGGATCAATGGGTGCAGAATCCATCTGCACACACAGCATTAGATGAGA TCCTGCCATGCATAGACAGCTCAACCGCACAAGAAACTCTGTCGAAAAGCAAGGAAGTGACATCCCAGCTTGCTGAGGTAGTGAACCAGGTGATCACCAA CATGTCCAACATCAACTTCTCCCCCAACTTCAAGCCATTGTACATCAACCAATCCGGTCCGTTAGTCCCGATTCTCTGCAACCCGTTTCATGCTGACTTG ACTGACCGCACCTGCAGCCCTGGTGAAGTGGACCTCAACAATGCCACACAGGCGTGGAGCAGCTATGTATGCCAGGTTTCGCCCTCGGGGATATGTGAAA CAACAGGGAGACTGACACCGACTATATACAGCCAGATGGCGGCTGCAGTTAATGTTAGCTATGGATTGATAAACTACGCGCCATTCTTGGTTGAATTAGA AGACTGCACATTTGCAAGGCAAACATTTGGTGGGATATACAGGGAACACTGTCCAGGTCTGAGGAAGTACAGCAGGGAGATCTATGTAGGACTGGTGATA GTCTCCACTGCAGTTATGCTGTCCTTGATATTCTGGCTCATTTACGGGAGAGAAAGGCGACACCGTGCCGGTAGTAGAAATACCAAGCAGCAGCATCGAG GTGATGAATCCGCAGGACACCAGGAGATGGAAATCATACCAGAGAACAAGGAGCACGGAGTTTGA
AA sequence Show only first row Show all	>Lus10001929 pacid=23175279 polypeptide=Lus10001929 locus=Lus10001929.g ID=Lus10001929.BGIv1.0 annot-version=v1.0 MYKVAKASEYLAIIEVGITDIKLAKKAWILPVGQSCTQFDISPVNYTFEGIIEGETCVLAASMTMKEIFHGTKEVKKEVFDKVQFELNQFLLIIYNANVK QLVDVPGSPAAAELPWRRSTVEIPSEPPMEPSSSSPLVALAAERTYRKDPLDGFKRYDGGWNISDRHYWASAGFTAAPLFLVALIWFLGFGICLLLGCLC HYCFKKQLHGFSRIAYALSLVFLVVFSIAAIIGCVVLYNGQGKFHRSTTRTLERLALIVVAAIMLVLTFLGLLFSIFGMQSLVSILVVLGWILVAGTFIL CGIFLLLHNVAGDACVAMDQWVQNPSAHTALDEILPCIDSSTAQETLSKSKEVTSQLAEVVNQVITNMSNINFSPNFKPLYINQSGPLVPILCNPFHADL TDRTCSPGEVDLNNATQAWSSYVCQVSPSGICETTGRLTPTIYSQMAAAVNVSYGLINYAPFLVELEDCTFARQTFGGIYREHCPGLRKYSREIYVGLVI VSTAVMLSLIFWLIYGRERRHRAGSRNTKQQHRGDESAGHQEMEIIPENKEHGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25270			unknown protein		Lus10001929 [exp]	0	1
AT2G25270			unknown protein		Lus10001945 [exp]	1.0	0.9512
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	2.4	0.9475
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	4.0	0.9229
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	4.2	0.9422
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	5.5	0.9333
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	6.2	0.9151
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	8.7	0.9095
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	8.7	0.9376
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	9.0	0.9200
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	10.9	0.9108

Compare expression of checked genes

Lus10001929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.