Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14890 76 / 2e-16 NHL domain-containing protein (.1) AT3G01430 71 / 2e-15 unknown protein AT5G25240 68 / 5e-15 unknown protein AT5G62865 67 / 3e-14 unknown protein AT3G48020 59 / 2e-11 unknown protein AT5G11070 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001942 [exp] 318 / 5e-113 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 307 / 1e-108 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10033413 [exp] 87 / 8e-22 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1) Lus10006290 [exp] 74 / 5e-17 AT5G25240 67 / 5e-15 unknown protein Lus10003184 [exp] 67 / 3e-13 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1) Lus10039628 [exp] 43 / 1e-05 ND 39 / 3e-04 Lus10032160 [exp] 40 / 0.0003 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259300 [exp] 99 / 7e-27 AT5G25240 47 / 2e-07 unknown protein Potri.015G073800 [exp] 91 / 3e-23 AT5G62865 87 / 5e-22 unknown protein Potri.012G078300 [exp] 86 / 3e-21 AT5G62865 77 / 6e-18 unknown protein Potri.018G114200 [exp] 81 / 7e-20 AT5G62865 57 / 1e-10 unknown protein Potri.003G101300 [exp] 69 / 3e-15 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.006G190100 [exp] 65 / 6e-14 AT5G25240 64 / 3e-14 unknown protein Potri.001G132100 [exp] 65 / 2e-13 AT3G01430 122 / 7e-36 unknown protein Potri.004G037500 [exp] 42 / 1e-05 ND / Potri.007G000801 [exp] 40 / 4e-05 ND / Potri.011G046112 [exp] 40 / 0.0003 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001933 pacid=23175272 polypeptide=Lus10001933 locus=Lus10001933.g ID=Lus10001933.BGIv1.0 annot-version=v1.0 ATGGCTGTAAATCCACAGCAAGATCAAGCTGCTGCATCCTTCGTCCCCAGTTCCCGACCACACGATCACCTTCCCTCCAAAGACTACGACGTCGTCGACG GTCTAGATGACGAACTCGGTGTCCCCTTCTCCCCCTCCTTCTGTCTCTGCTTCCCAGCCCACTGCTTCAGCCGCCGACGAACCACCAAAGCCGGCTCCCG TACTTATTTTTTGCAAACCGATCAAGAAGATTGTTCCGAAGAAGATCAAGATGGGCTGCGTTGGTATTCCGGCGGGCGGCGGTGGGTGGTGGAGAAGCTG AAGAAGGCGAGAGAAATATCCGAGTTGGTTGCAGGCCCCAAGTGGAAAAATTTCATTCGAAGATTTAGCAGACCAGCCTTTGGGTCTTCGAATTCTAAGA AGAGGACCAAGTTTCAATACGACCCTCAGAGCTACGCGCTTAACTTCGATGACGGCGATGCCACCGACGACTGCGGATACCCGGATTTCTCGGCCAGATT CTCCGCTCCTGGGCAGTCTTGA
AA sequence Show only first row Show all	>Lus10001933 pacid=23175272 polypeptide=Lus10001933 locus=Lus10001933.g ID=Lus10001933.BGIv1.0 annot-version=v1.0 MAVNPQQDQAAASFVPSSRPHDHLPSKDYDVVDGLDDELGVPFSPSFCLCFPAHCFSRRRTTKAGSRTYFLQTDQEDCSEEDQDGLRWYSGGRRWVVEKL KKAREISELVAGPKWKNFIRRFSRPAFGSSNSKKRTKFQYDPQSYALNFDDGDATDDCGYPDFSARFSAPGQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	0	1
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	2.0	0.7439
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	7.1	0.7487
					Lus10003882 [exp]	10.5	0.6824
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	12.4	0.7309
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	15.9	0.6467
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	16.7	0.7186
AT3G22430			unknown protein		Lus10021917 [exp]	20.2	0.6797
AT5G14890			NHL domain-containing protein ...		Lus10001932 [exp]	21.6	0.6381
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	22.4	0.6704
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	25.4	0.6267

Compare expression of checked genes

Lus10001933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.