Plant FIBer expression Database

Lus10001935 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32030 60 / 7e-11 unknown protein
AT1G15800 40 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G259700
[exp]
104 / 3e-27 AT4G32030 104 / 9e-27 unknown protein
Potri.017G053900
[exp]
65 / 1e-12 AT1G80610 88 / 5e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10001935 pacid=23175278 polypeptide=Lus10001935 locus=Lus10001935.g ID=Lus10001935.BGIv1.0 annot-version=v1.0
ATGAGATGCGACGTGGTTTCTAGAAGGAAGGGAGGCGATTCCTCTACCAGATGCAGTCCGACGACGCCGCTTTCCTGGAGCGGTGGAGGCGGCCCAGAAT
CTCCCTCAGCCGCCGCCGATGGTTACGATGAGACCAGCCATCGTTCTCCTTCTGGTTCCAGATCCAAGGGTGGTAACGCAACTGCTGCTGAAATAACTAG
CACTGGCACCACAAGCACCAAACGAACCCGAAGAAAGAAGACTTTAGCTGAACTTAGGGAGGAGGAATGCTTTCTTTGGAAGGAAAGGATGCACCTCAAA
AAGGAGATACAAACTCTGCATGCTACATTTGAGGACGAGAGATCCATAAACCAGAGGTTGAAGAGAATTAAGATGGATCTGGGGTTGAATTATTCAATCA
ACTCAAACAACAGTATAGCTTCTTTGGGAGAAAGGCATAAAGGAATAGTGAAAGTTGAAGAGCAGACCCCAAGAGTGGAATCGTCTTCTTTGGGGAATAT
TCCTTCGTCAACTCTACTTCTTCCCCAGTCAGAGTCATGTAGCCGAACAGATGATACGTGTTTCAGCGGCAGCGATCCCTTTTTGTTGCCCGACTTAAAC
ATGATGCCCTCCGAAGAAGATCCCACCACTTTATAG
AA sequence
>Lus10001935 pacid=23175278 polypeptide=Lus10001935 locus=Lus10001935.g ID=Lus10001935.BGIv1.0 annot-version=v1.0
MRCDVVSRRKGGDSSTRCSPTTPLSWSGGGGPESPSAAADGYDETSHRSPSGSRSKGGNATAAEITSTGTTSTKRTRRKKTLAELREEECFLWKERMHLK
KEIQTLHATFEDERSINQRLKRIKMDLGLNYSINSNNSIASLGERHKGIVKVEEQTPRVESSSLGNIPSSTLLLPQSESCSRTDDTCFSGSDPFLLPDLN
MMPSEEDPTTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32030 unknown protein Lus10001935
[exp]
0 1
AT5G02290 NAK Protein kinase superfamily pro... Lus10003972
[exp]
1.7 0.9248
AT1G75860 unknown protein Lus10033130
[exp]
5.5 0.9060
AT3G16720 ATL2 TOXICOS EN LEVADURA 2 (.1) Lus10037490
[exp]
5.9 0.8985
AT2G23810 TET8 tetraspanin8 (.1) Lus10019965
[exp]
6.2 0.9235
AT4G28400 Protein phosphatase 2C family ... Lus10040565
[exp]
7.3 0.9171
AT2G17140 Pentatricopeptide repeat (PPR)... Lus10013832
[exp]
7.7 0.8966
AT3G20530 Protein kinase superfamily pro... Lus10019621
[exp]
7.9 0.8109
Lus10043392
[exp]
8.0 0.9079
AT3G56400 WRKY ATWRKY70, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10030517
[exp]
10.7 0.8717
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Lus10024074
[exp]
11.2 0.8974

Lus10001935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.