Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001940 [exp] 229 / 6e-78 AT4G32020 62 / 1e-12 unknown protein Lus10005344 [exp] 93 / 3e-24 AT4G32020 66 / 1e-13 unknown protein Lus10041025 [exp] 87 / 6e-22 AT2G25250 60 / 8e-12 unknown protein Lus10019069 [exp] 44 / 1e-05 AT4G02040 64 / 8e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022400 [exp] 52 / 7e-09 AT4G32020 62 / 2e-12 unknown protein Potri.006G260000 [exp] 45 / 3e-06 AT4G32020 47 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001936 pacid=23175288 polypeptide=Lus10001936 locus=Lus10001936.g ID=Lus10001936.BGIv1.0 annot-version=v1.0 ATGGCCATCGCCCTTCTCAGCCCTCAAGACTGCCTCCGGGATCCCATCCCCTCCCGCGGCGCCCTTCTCTCCACCCCTCCTCGCACCAAAATCCACCGCA ACTCTGACCCTAGCCCCCCATCTTACAAATCCAACTCCAGGCATAGTCGTATCCGCAGAAAGCAGATTCCTAACTCATCTCCTCAACTAACTGATGCGTC GCTCTCTCCCCAGTCTGCATCCAAGAGCCTCATGATGGGCGGTGTGGTCAAGATCCTCAAGCGCTGCGAGAAGATTCCGAATGAGAAGAACCAGGTTCCG ATCGAGATATTCTCTGCCGACTCCAACAAGGTTTCAGTGAACAGATCTGTTGATGGTTTCTATGCTGGATCTGGATTTTTCACCTCGCCGCCCCCGAGCT CGCTGCCCATGCCGGCCTTCATTAAGAAGACCAGTAACCTGGAGGCCACTACCGGTCTGTGTAGGCTTCTGAATTTGAGTTTGTAG
AA sequence Show only first row Show all	>Lus10001936 pacid=23175288 polypeptide=Lus10001936 locus=Lus10001936.g ID=Lus10001936.BGIv1.0 annot-version=v1.0 MAIALLSPQDCLRDPIPSRGALLSTPPRTKIHRNSDPSPPSYKSNSRHSRIRRKQIPNSSPQLTDASLSPQSASKSLMMGGVVKILKRCEKIPNEKNQVP IEIFSADSNKVSVNRSVDGFYAGSGFFTSPPPSSLPMPAFIKKTSNLEATTGLCRLLNLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32020			unknown protein		Lus10001936 [exp]	0	1
AT1G75860			unknown protein		Lus10033130 [exp]	1.0	0.9348
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	1.4	0.9289
AT4G32020			unknown protein		Lus10001940 [exp]	1.7	0.9245
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	3.2	0.8953
AT5G41590			Protein of unknown function (D...		Lus10017526 [exp]	4.4	0.8600
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	5.3	0.8917
					Lus10039441 [exp]	6.2	0.8765
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	6.3	0.9046
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	7.5	0.8851
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10006493 [exp]	8.5	0.8639

Compare expression of checked genes

Lus10001936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.