Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32000 467 / 2e-163 Protein kinase superfamily protein (.1.2) AT2G25220 451 / 3e-157 Protein kinase superfamily protein (.1.2) AT5G11020 431 / 5e-149 Protein kinase superfamily protein (.1) AT1G80640 369 / 5e-125 Protein kinase superfamily protein (.1.2) AT3G58690 287 / 4e-93 Protein kinase superfamily protein (.1) AT4G02010 268 / 1e-82 Protein kinase superfamily protein (.1) AT1G54820 255 / 4e-80 Protein kinase superfamily protein (.1) AT1G61860 247 / 8e-78 Protein kinase superfamily protein (.1) AT2G20300 255 / 3e-77 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT3G24790 245 / 3e-77 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041026 [exp] 638 / 0 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 564 / 0 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 396 / 3e-135 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 391 / 7e-134 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10001939 [exp] 372 / 4e-128 AT4G32000 175 / 7e-52 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 268 / 1e-84 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10033606 [exp] 265 / 2e-84 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 263 / 8e-84 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10004461 [exp] 261 / 5e-82 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260100 [exp] 579 / 0 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 552 / 0 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.001G048500 [exp] 437 / 3e-151 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 413 / 2e-142 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 282 / 2e-91 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 275 / 6e-88 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 274 / 1e-87 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 275 / 9e-85 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 261 / 1e-79 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 249 / 6e-79 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001937 pacid=23175281 polypeptide=Lus10001937 locus=Lus10001937.g ID=Lus10001937.BGIv1.0 annot-version=v1.0 ATGAAGCAGAAGCAGCCATTGCCTTTTCTTTGTCTTCTTCTTCTTAGCTATCTGTTATTATCCTCACACTTACCCACTTGGATTTCCCCTCGCTTCTGCT CTGTTGAAGCTGCTGCTGCTCCAGACGCTCTTCCTTCTCCGGTCTCTCAGCCTGACGTCTCTGCTTCCATGGCTGCTGTTTCTCCAGGAATCCAGTTGCA ATTGGGAGTTGAAGCAGGTGGAAAACTTATGGAATTGGACAAGAAAACCCACCTCATACTTGCTGTTGCTTGCATTGCCATGGCTGTTATTATCTTTCTC TTTTCATCTGCTTGCTGCATTCATTTCATCCGGAAGAAGAAAAATGCCCAAAGCCCAGATGTGGAGAAAGGAGACTTGTTCAGAAAATTCGGTTCCTTGA GCAACAAGGGATCTGTTCCATTGATCGAATATAGCACGCTAGAGAAAGGAACCCAAAACTTTGTAGACGATAATTTGTTGGGCAGGGGAGGATTCGGATA TGTTTACAAAGCCACGATGGATGATAACTCGGAAGTTGCAGTCAAGAAACTCGATTGTGCAACTGAGGATGCAAAAAGGGAATTTCAGACTGAGGTGAAC TTGTTGAGCAAATTTCGTCATCCGAACATAATTTCCCTGGTCGGTTATGGTGTTCATGAGGATATGGGATTCATTGTATATGAGTTGATGCATAACGGCT CACTTGAAGATCTTTTGCATGGACCTTCTCGTGGGTCGAAATTAACTTGGCATATGAGGCTGAAGATTGCACTTGATACAGCCAGAGGATTAGAATATCT GCATGAGTTCTGCAAGCCACTAGTGATCCATAGAGATCTGAAATCGTCCAATATCCTTTTGGATTCAAACTTCCATGCTAAGCTCTCAGATTTTGGTCTA GCCGTGGCTGAGAGCACCCATAATAGGAAAAAGCTCAAGCTTTCTGGCACCGTAGGCTATGTTGCTCCAGAGTACATGCTAGATGGAGGGTTGACTGAGG AGAGGGATGTATATGCATATGGAATTGTGCTGCTGGAGCTTCTATTGGGAAGAAGGCCAGTGGAGAAATTGGCACCAGCTCATTGCCAATCTATTGTCAC ATGGGCCATGCCACAACTCACTAATAGAGACATGCTCCCAAACATAGTGGATCCTGTCATTAGAGACATCATCGATGAGAAGTATTTGTTTCAGGTTGCT GCTGTAGCCGTACTATGTATACAGCCAGAACCTTCTTACCGGCCGCTCATTACAGATATCGTTCACTCTTTGATTCCGTTGGTTCCAATTGAATTGGGAG GGACCCTAAGGACTAACATAGGATGGCGAGTCTCGTCATAG
AA sequence Show only first row Show all	>Lus10001937 pacid=23175281 polypeptide=Lus10001937 locus=Lus10001937.g ID=Lus10001937.BGIv1.0 annot-version=v1.0 MKQKQPLPFLCLLLLSYLLLSSHLPTWISPRFCSVEAAAAPDALPSPVSQPDVSASMAAVSPGIQLQLGVEAGGKLMELDKKTHLILAVACIAMAVIIFL FSSACCIHFIRKKKNAQSPDVEKGDLFRKFGSLSNKGSVPLIEYSTLEKGTQNFVDDNLLGRGGFGYVYKATMDDNSEVAVKKLDCATEDAKREFQTEVN LLSKFRHPNIISLVGYGVHEDMGFIVYELMHNGSLEDLLHGPSRGSKLTWHMRLKIALDTARGLEYLHEFCKPLVIHRDLKSSNILLDSNFHAKLSDFGL AVAESTHNRKKLKLSGTVGYVAPEYMLDGGLTEERDVYAYGIVLLELLLGRRPVEKLAPAHCQSIVTWAMPQLTNRDMLPNIVDPVIRDIIDEKYLFQVA AVAVLCIQPEPSYRPLITDIVHSLIPLVPIELGGTLRTNIGWRVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	0	1
					Lus10007307 [exp]	4.9	0.7682
AT1G74160			unknown protein		Lus10034678 [exp]	5.1	0.8006
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	8.1	0.7560
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	10.0	0.7627
					Lus10029254 [exp]	10.5	0.7669
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	16.5	0.7518
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	17.9	0.7431
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	21.6	0.7577
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	22.8	0.7362
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	23.1	0.7243

Compare expression of checked genes

Lus10001937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.