Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31990 785 / 0 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT5G19550 471 / 3e-165 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 472 / 1e-164 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 426 / 2e-147 ASP4 aspartate aminotransferase 4 (.1.2) AT2G30970 411 / 4e-141 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001753 [exp] 656 / 0 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10043222 [exp] 490 / 2e-172 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 487 / 4e-171 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 479 / 4e-167 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10029796 [exp] 408 / 8e-140 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 408 / 9e-140 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 342 / 5e-114 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10000181 [exp] 199 / 2e-59 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260200 [exp] 837 / 0 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 836 / 0 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G082500 [exp] 489 / 6e-172 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 478 / 6e-167 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 447 / 2e-155 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.014G143300 [exp] 401 / 5e-137 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 385 / 5e-131 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10001938 pacid=23182270 polypeptide=Lus10001938 locus=Lus10001938.g ID=Lus10001938.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCGGTGCTCTCTGCTGCATCTCCTTCCGTTTCTCCTCTCACTCACCGTCTCAAGGGCAAGGTGAGAGTCGGAAGTGACAATGTCAGTTCAT TGTTTAACAAGGACAAACGATATCCCCTTTTTCACTCGAAGTCTTCTGGGAGGATTAGGATGAGTCTTGCTGTTGATGTCTCCCGGTTTGAAGCCATAAC TATGGCTCCACCAGATCCAATCCTGGGAGTGTCTGAAGCTTTTAAGGCTGACAATGATCAAAAGAAGCTCAACCTTGGAGTTGGTGCTTATAGAACTGAA GAGCTACAGCCGTATGTGCTTGATGTTGTAAAGAAGGCGGAGAATCTTATGCTGGAGAAAGGTGATAATAAGGAGTATCTGCCTATTGAGGGTCTGGCAG CATTCAATAAGGTGACTGCTGAGCTGTTGTTTGGAGCTGACAACCCGGTGATAAAAGAGCAAAGGGTTGCCACAGTTCAAGGTCTCTCAGGTACTGGATC CCTCCGGTTGGCTGCAGTTTTGATTGAGCGATACTTCCCTGGTGCAAAAGTTCTGATTTCATCTCCAACTTGGGGGAATCACAAGAATATCTTCAATGAT GCTAGAGTTCCATGGTCTGAGTACAGATACTATGACCCGAAGACAGTTGGTCTGGATTTTGAAGGGATGATAGAAGACATAAAGGCTGCTCCTGAAGGAT CGTTTGTGTTGCTTCACGGCTGTGCTCACAACCCAACTGGCATCGATCCAACCCCAGAACAATGGGAGAAGATTGCAGATGCGATTCAGGAGAAGAACCA CATCCCATTTTTTGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAGGATGCATCATCAGTAAGACTATTTGCTGCGCGTGGTATGGAGATT TTTGTTGCTCAGTCATACAGCAAAAATCTAGGTCTCTATTCGGAGAGGATTGGAGCTATCAATGTCGTCTGCTCATCAGCAGATACTGCAGCAAGGGTTA AGAGCCAACTGAAAAGAATTGCCAGACCGATGTATTCAAATCCTCCCATACATGGTGCTAGAATTGTTGCCAATGTTGTTGGAGATCCAGCTCTATTTGA TGAATGGAAGGCTGAGATGGAAATGATGGCTGGTAGGATAAAAGGAGTACGACAGAAGCTTTACGATAGTCTCTCAACAAAAGATACAAGTGGAAAGGAT TGGTCTTTCATACTTAAGCAGATTGGAATGTTCTCATTCACTGGCTTGAACAAAAATCAGAGCGATAATATGACCAATAAGTGGCACATATACATGACGA AAGATGGAAGGATATCATTAGCTGGGCTGTCTTTGGCCAAGTGCGAGTATCTTGCGGACGCCATTATTGACTCCTACCATAATGTCAACTAA
AA sequence Show only first row Show all	>Lus10001938 pacid=23182270 polypeptide=Lus10001938 locus=Lus10001938.g ID=Lus10001938.BGIv1.0 annot-version=v1.0 MASAVLSAASPSVSPLTHRLKGKVRVGSDNVSSLFNKDKRYPLFHSKSSGRIRMSLAVDVSRFEAITMAPPDPILGVSEAFKADNDQKKLNLGVGAYRTE ELQPYVLDVVKKAENLMLEKGDNKEYLPIEGLAAFNKVTAELLFGADNPVIKEQRVATVQGLSGTGSLRLAAVLIERYFPGAKVLISSPTWGNHKNIFND ARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADAIQEKNHIPFFDVAYQGFASGSLDEDASSVRLFAARGMEI FVAQSYSKNLGLYSERIGAINVVCSSADTAARVKSQLKRIARPMYSNPPIHGARIVANVVGDPALFDEWKAEMEMMAGRIKGVRQKLYDSLSTKDTSGKD WSFILKQIGMFSFTGLNKNQSDNMTNKWHIYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	0	1
AT2G02410			unknown protein		Lus10042400 [exp]	1.7	0.8597
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	3.9	0.7922
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	13.0	0.8086
AT5G66580			unknown protein		Lus10019659 [exp]	15.0	0.7597
AT5G50460			secE/sec61-gamma protein trans...		Lus10041552 [exp]	22.6	0.7854
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	30.9	0.7407
AT4G30010			unknown protein		Lus10025458 [exp]	35.2	0.8016
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10039791 [exp]	35.8	0.8024
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10032587 [exp]	38.1	0.7979
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	38.5	0.7949

Compare expression of checked genes

Lus10001938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.