Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11020 175 / 8e-52 Protein kinase superfamily protein (.1) AT4G32000 169 / 8e-50 Protein kinase superfamily protein (.1.2) AT1G80640 154 / 1e-44 Protein kinase superfamily protein (.1.2) AT2G25220 153 / 1e-43 Protein kinase superfamily protein (.1.2) AT4G02010 129 / 7e-34 Protein kinase superfamily protein (.1) AT4G32710 126 / 7e-34 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT3G58690 123 / 1e-32 Protein kinase superfamily protein (.1) AT3G24540 124 / 2e-32 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G18470 121 / 6e-31 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G26150 118 / 5e-30 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001937 [exp] 370 / 6e-128 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 284 / 3e-94 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 216 / 3e-67 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 137 / 7e-38 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 135 / 1e-36 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10024020 [exp] 121 / 3e-31 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 120 / 3e-31 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10011466 [exp] 122 / 5e-31 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040467 [exp] 120 / 7e-31 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260100 [exp] 249 / 3e-80 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 228 / 5e-72 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.001G048500 [exp] 160 / 5e-46 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 153 / 9e-44 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 128 / 2e-34 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 129 / 1e-33 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 121 / 5e-31 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 121 / 6e-31 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.014G119100 [exp] 121 / 7e-31 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G217700 [exp] 119 / 4e-30 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001939 pacid=23182274 polypeptide=Lus10001939 locus=Lus10001939.g ID=Lus10001939.BGIv1.0 annot-version=v1.0 ATGGAATTGGATAAGAAAACCCACCGCATACTTGCTGTTGCTTGCATTGCCATGGCTGTCATTATCTTTCTCTTTTCATCTGCTTGCTGCATTCATTTCA CCCGGAAGAAGAAAAATGCCCAAAGCCCAGATATGGAGAAAGGAGCCTTGTTCAGCAAATTCGGTTCCTTGAGCAACAAGGGATCTGTTCCATTGATCGA ATATAGGACGCTAGAGAAAGGAACCCAAAACTTTGTAGACGATAATTTGTTGGGCAGGGGAGGATTCGGATATGTTTACAAAGCCACCATGGATGATAAC TCGGAAGTCACAGTCAAGAAACTCGATTGTGCAACTGAGGATGCAAAAAGGGGATTTCAGACTGAGTTGAACTTCTTGAGCAAATTTCGTCATCCGAACA TAATTTCCTTGGTCGGTTATGGTGTTCATGAGGATATGGGATTCATTGTATATGAGTTGATGCCTAACGGCTCACTTGAAGATCTTTTGCATGGATTAGA ATATTTGCATGAGTTCTGCAAGCCACTAGTGATCCATAGAGATCTGAAATCGTCCAATATCCTTTTGGATTCAAACTTCCATGCTAAGGCCATGTCACAG CTCACTAATCGAGACATGCTCCCAAACATAGTGGATCCCGTCATTAGAGACACAATCGATGAGAAGTACCTGTTTCAGGTTGCTGCTGTGGCCATACTAT GTGTACAGCCAGAACCTTCTTACCGACCGCTCATGATAGATATCGTTCACTCTTTGATTCCGTTGGTTCCAGTTGAATTAGGAGGGACCCTAAGGACTAA CATAGGATGGTGA
AA sequence Show only first row Show all	>Lus10001939 pacid=23182274 polypeptide=Lus10001939 locus=Lus10001939.g ID=Lus10001939.BGIv1.0 annot-version=v1.0 MELDKKTHRILAVACIAMAVIIFLFSSACCIHFTRKKKNAQSPDMEKGALFSKFGSLSNKGSVPLIEYRTLEKGTQNFVDDNLLGRGGFGYVYKATMDDN SEVTVKKLDCATEDAKRGFQTELNFLSKFRHPNIISLVGYGVHEDMGFIVYELMPNGSLEDLLHGLEYLHEFCKPLVIHRDLKSSNILLDSNFHAKAMSQ LTNRDMLPNIVDPVIRDTIDEKYLFQVAAVAILCVQPEPSYRPLMIDIVHSLIPLVPVELGGTLRTNIGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	3.5	0.8285
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	5.3	0.7849
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	6.0	0.8040
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	7.3	0.7868
AT5G25360			unknown protein		Lus10002164 [exp]	9.2	0.7585
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	12.0	0.7763
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	13.8	0.7600
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	14.0	0.8044
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	14.3	0.7982
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	14.4	0.7451

Compare expression of checked genes

Lus10001939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.