Plant FIBer expression Database

Lus10001940 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001936
[exp]
203 / 1e-67 AT4G32020 57 / 2e-10 unknown protein
Lus10005344
[exp]
96 / 3e-25 AT4G32020 66 / 1e-13 unknown protein
Lus10041025
[exp]
90 / 3e-23 AT2G25250 60 / 8e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G022400
[exp]
46 / 2e-06 AT4G32020 62 / 2e-12 unknown protein
Potri.006G260000
[exp]
45 / 3e-06 AT4G32020 47 / 1e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10001940 pacid=23182272 polypeptide=Lus10001940 locus=Lus10001940.g ID=Lus10001940.BGIv1.0 annot-version=v1.0
ATGGCCATCGCCCTTCTCAGCCCTCAAGACTGCCTCCGGGATCCCATCTCCTCCCGCGGCGGCCTTCTCTCCACCCCTCCTCGCACCAAAATCCACCGCA
ACTCTGACCCTAGCCCCCCATCTTCCAAATCCAACTCGAGGCACGGTCGTGCTCAATCAATCCGCAGAAAGCGGATTTCTAACTCATCCCCTCAACTAAC
TGATGCGTCGCTCTCTCCCCAGGCTGCATCCAAGAGCCTCATGATGGGCGGTGTGGTCAAGATCCTCAAGCGCGGCGAGCAGATACCGATGAAAAAAAAC
CAGGATCAGATCGAGATATTCTCCGTCGACTCCAAGAAAGTTTCAGTGAACAAATCTGTTGATGGTTTCTATGCTGGATCTGGATTTTTCACCTCGCCAC
CCCCGAGCTCGCTGCCCCTGCCGGCCTTCATTAAAAAGCCTAGTAACCTGGAAGCCACTACCAGTCTGTGTAGGCTTCTGAATTTGAGTTTGTAG
AA sequence
>Lus10001940 pacid=23182272 polypeptide=Lus10001940 locus=Lus10001940.g ID=Lus10001940.BGIv1.0 annot-version=v1.0
MAIALLSPQDCLRDPISSRGGLLSTPPRTKIHRNSDPSPPSSKSNSRHGRAQSIRRKRISNSSPQLTDASLSPQAASKSLMMGGVVKILKRGEQIPMKKN
QDQIEIFSVDSKKVSVNKSVDGFYAGSGFFTSPPPSSLPLPAFIKKPSNLEATTSLCRLLNLSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32020 unknown protein Lus10001940
[exp]
0 1
AT4G32020 unknown protein Lus10001936
[exp]
1.7 0.9245
AT5G39865 Glutaredoxin family protein (.... Lus10001669
[exp]
4.9 0.9024
AT1G78080 AP2_ERF CAF1, RAP2.4, W... wound induced dedifferentiatio... Lus10022497
[exp]
5.0 0.8946
AT2G40140 C3HZnF ATSZF2, CZF1, Z... \(SALT-INDUCIBLE ZINC FINGER 2... Lus10028970
[exp]
6.2 0.9167
AT1G78080 AP2_ERF CAF1, RAP2.4, W... wound induced dedifferentiatio... Lus10016801
[exp]
6.3 0.8919
AT2G33580 Protein kinase superfamily pro... Lus10008586
[exp]
7.3 0.8943
AT3G27540 beta-1,4-N-acetylglucosaminylt... Lus10035231
[exp]
8.5 0.8825
AT4G11070 WRKY ATWRKY41, WRKY4... WRKY family transcription fact... Lus10032372
[exp]
9.5 0.9059
AT5G11000 Plant protein of unknown funct... Lus10017128
[exp]
11.2 0.8531
AT3G16720 ATL2 TOXICOS EN LEVADURA 2 (.1) Lus10006493
[exp]
12.7 0.8450

Lus10001940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.