Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11060 416 / 8e-145 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT5G25220 414 / 1e-143 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 369 / 3e-126 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G62990 348 / 1e-119 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G70510 108 / 8e-27 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 107 / 4e-26 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 107 / 6e-26 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 96 / 6e-22 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT2G23760 61 / 6e-10 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 59 / 2e-09 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001934 [exp] 550 / 0 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 403 / 5e-139 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 328 / 1e-112 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10024485 [exp] 297 / 8e-100 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10017824 [exp] 207 / 7e-66 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001195 [exp] 140 / 4e-40 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10029125 [exp] 101 / 6e-24 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 100 / 8e-24 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 90 / 1e-19 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022700 [exp] 420 / 5e-146 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G259400 [exp] 416 / 3e-144 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 388 / 1e-134 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 383 / 1e-132 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.001G112200 [exp] 353 / 2e-121 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.005G014200 [exp] 130 / 7e-35 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 126 / 3e-33 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 110 / 3e-27 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.011G011101 [exp] 108 / 2e-26 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 108 / 2e-26 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10001941 pacid=23182264 polypeptide=Lus10001941 locus=Lus10001941.g ID=Lus10001941.BGIv1.0 annot-version=v1.0 ATGGAATTCCACCACCATAGTGAAGAAGTTCCTGATCTCCATAACTTCCCCTCCGACCAAACCCAACAACAACAACAACAAGTCCCCACGGCATCCTCAC AGTCACCACCCAATAATTGGCTCAACTCTGCTCTCCTCCTCCGCGGCCCCCAACACCCGCCCGCCGCCGACACCAATTTTCTCAACCTCGCGGCCTCTTC CGACATCATCCACAACACTACTACTCCATCTGACTCCATATTAAACCAGAGCCACAACAACTTGAAGCAGAATAGTAATACTCCTAGCGAATCAGAAAGC GGTGGAGGAGATTCGAGCGGGAGGTACAAGGGAGAGATACTTGCTCACCCGCTGTACGAGCAGCTTTTGTCGGCACACGTGGCGTGCCTGAGAATAGCGA CGCCGGTGGATCAGCTTCCGAGGATTGATGCACAATTGGCCCAGTCTCATAATATCGTCTCCAAATATCCTCATCATCATCATCTTCATCTCCCTGCATC GCCCGATCACAAAGAACTTGACCAGTTCATGAGTCATTACTTTCTGCTGCTATGTTCGTTCAAAGAACAACTACAAGAACACGTAAGAGTTCATGCAATG GAGGCAGTAATGGCTTGCTGGGAGATTGAGCAGTCTTTGCAAAGTTTAACAGGGGTGTCACCAGGTGAAGGGACCGGTGCCACTATGTCGGACGAGGATG ATGACGGCCATGTAGTAGTAGTAGAAAGCGAATTAGGCGCCGTCACTACTTCGTTTGATGATTCGATGGGATTTGGTCCTCTTGTCCCAAGCGAGACGGA GAGGTCTTTAATGGAACGAGTGAGGGCCGAGTTGAAACATGAACTTAAGCAGGGTTACAAAGACAAGATTGCGGACATTAGGGAAGAGATACTGAGGAAG AGAAGAGCGGGAAAGCTGCCTGGAGACACTACCTCTGTCCTCAAATCTTGGTGGCAATCTCATTCCAAGTGGCCTTATCCCACCGAGGAAGATAAGGCGA GGTTGGTAGAGGAAACAGGGTTACAGCTGAAGCAGATAAACAACTGGTTCATCAACCAGAGGAAGAGAAACTGGCATACCAACCCTTCCAGTACTTCAAC CTCTACTTCCTCCAAAACTAAACGCAAGAGGTCTCAAGTAGATCTCAAGTAA
AA sequence Show only first row Show all	>Lus10001941 pacid=23182264 polypeptide=Lus10001941 locus=Lus10001941.g ID=Lus10001941.BGIv1.0 annot-version=v1.0 MEFHHHSEEVPDLHNFPSDQTQQQQQQVPTASSQSPPNNWLNSALLLRGPQHPPAADTNFLNLAASSDIIHNTTTPSDSILNQSHNNLKQNSNTPSESES GGGDSSGRYKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSHNIVSKYPHHHHLHLPASPDHKELDQFMSHYFLLLCSFKEQLQEHVRVHAM EAVMACWEIEQSLQSLTGVSPGEGTGATMSDEDDDGHVVVVESELGAVTTSFDDSMGFGPLVPSETERSLMERVRAELKHELKQGYKDKIADIREEILRK RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVEETGLQLKQINNWFINQRKRNWHTNPSSTSTSTSSKTKRKRSQVDLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001941 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	7.7	0.9032
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	7.9	0.8967
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	11.1	0.8984
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001934 [exp]	15.7	0.8140
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	17.2	0.8880
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	27.8	0.8802
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	28.1	0.8878
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	30.3	0.8701
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	33.0	0.8513
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10039629 [exp]	34.9	0.8785

Compare expression of checked genes

Lus10001941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.