Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14890 77 / 1e-16 NHL domain-containing protein (.1) AT3G01430 68 / 2e-14 unknown protein AT5G25240 66 / 4e-14 unknown protein AT5G62865 63 / 1e-12 unknown protein AT3G48020 59 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001933 [exp] 294 / 3e-103 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 277 / 1e-96 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10033413 [exp] 87 / 1e-21 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1) Lus10006290 [exp] 75 / 2e-17 AT5G25240 67 / 5e-15 unknown protein Lus10003184 [exp] 67 / 2e-13 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1) Lus10039628 [exp] 44 / 7e-06 ND 39 / 3e-04 Lus10032160 [exp] 40 / 0.0002 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259300 [exp] 100 / 3e-27 AT5G25240 47 / 2e-07 unknown protein Potri.015G073800 [exp] 82 / 5e-20 AT5G62865 87 / 5e-22 unknown protein Potri.012G078300 [exp] 80 / 4e-19 AT5G62865 77 / 6e-18 unknown protein Potri.018G114200 [exp] 79 / 9e-19 AT5G62865 57 / 1e-10 unknown protein Potri.003G101300 [exp] 68 / 8e-15 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.001G132100 [exp] 64 / 5e-13 AT3G01430 122 / 7e-36 unknown protein Potri.006G190100 [exp] 62 / 1e-12 AT5G25240 64 / 3e-14 unknown protein Potri.004G037500 [exp] 42 / 1e-05 ND / Potri.007G000801 [exp] 40 / 5e-05 ND / Potri.011G046112 [exp] 40 / 0.0003 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001942 pacid=23182261 polypeptide=Lus10001942 locus=Lus10001942.g ID=Lus10001942.BGIv1.0 annot-version=v1.0 ATGGCTGTAAATCCACAGCAAGATCAAGCTGCTGCATCCTTCGTCCCCAGTTCCCGACCACACGATCACCTTCCCTCCAAAGACTACGACGTCGTCGACG GTCTAGATGACGAACTCGGTGTCCCCTTCTCCCCCTCCTTCTGTCTCTGCTTCCCAGCCCACTGCTTCAGCCGCCGACGAACCACCAAATCCGGCTCCCG TACTTATTTTTTGCAAACCGATCAAGAAGATTGTTCCGAAGAAGATCAAGATGGACTGCGTTGGTATTCCGGCGGGCGGCGGTGGGTGGTGGAGAAGCTG AAGAAGGCGAGAGAAATATCCGAGTTGGTTGCAGGCCCCAAGTGGAAAAATTTCATTCGAAGATTTAGCAGACCAGCCTTTGGGTCTTCGAATTCTAAGA AGAGGACCAAGTTTCAATACGACCCTCAGAGCTACGCGCTTAACTTCGATGACGGCGATGCCACCGACGACTGCGGATACCCGGATTTCTCGGCCAGATT CGCCGCTCCTAGGCAGTCTTGA
AA sequence Show only first row Show all	>Lus10001942 pacid=23182261 polypeptide=Lus10001942 locus=Lus10001942.g ID=Lus10001942.BGIv1.0 annot-version=v1.0 MAVNPQQDQAAASFVPSSRPHDHLPSKDYDVVDGLDDELGVPFSPSFCLCFPAHCFSRRRTTKSGSRTYFLQTDQEDCSEEDQDGLRWYSGGRRWVVEKL KKAREISELVAGPKWKNFIRRFSRPAFGSSNSKKRTKFQYDPQSYALNFDDGDATDDCGYPDFSARFAAPRQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14890			NHL domain-containing protein ...		Lus10001942 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Lus10001932 [exp]	1.7	0.7417
AT1G57680			unknown protein		Lus10008842 [exp]	4.8	0.7715
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	13.0	0.7293
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	20.4	0.7293
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	21.7	0.7363
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	22.4	0.7502
AT1G58330		ZW2	transcription factor-related (...		Lus10025265 [exp]	23.6	0.7051
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	25.7	0.7072
AT5G45660			unknown protein		Lus10002778 [exp]	30.1	0.7369
AT3G07870			F-box and associated interacti...		Lus10012355 [exp]	30.3	0.7143

Compare expression of checked genes

Lus10001942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.