Plant FIBer expression Database

Lus10001943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11070 48 / 2e-07 unknown protein
AT5G35090 42 / 3e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001931
[exp]
122 / 5e-36 AT5G35090 39 / 3e-04 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G259200
[exp]
94 / 4e-25 AT5G11070 56 / 3e-10 unknown protein
Potri.003G070750
[exp]
88 / 9e-23 AT5G11070 64 / 1e-13 unknown protein
Potri.003G048200
[exp]
39 / 0.0005 AT5G11070 49 / 8e-08 unknown protein
Potri.003G101300
[exp]
38 / 0.001 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10001943 pacid=23182268 polypeptide=Lus10001943 locus=Lus10001943.g ID=Lus10001943.BGIv1.0 annot-version=v1.0
ATGGCGATGCCGATTATTAGCGACGACGAAGAGTACTACTCTCCCACCTCCTTCAAGGACAAGCTCAAGTTATCCATCTGCTGCTTCACTCCCATCCGCC
ACCACCACATCCTCCACCCTGACTACGATTTCGACCCCAGCAACACCAAGCCGCCTCCTGCCAGATCTAGCCAATATCATCTTGAGATCAAGGACAGGTG
CAGGGGGTTCATCATCGGTAGGAGATCCGCAGGAGGAGGCCGGAACAAGAGAGGACACAGATCCGATTATTTCAGATACGATCCAGAGAGCTACTCTCTC
AATTTCGAGGAGGACGGTGCCAATCGAGAGGATGATCAACTACCGTTTAGTAGCTTCGCAGCCAGACTTCCGGCAACTCCAGAAAGGTTTACCCGTATTG
AGACTTGGGCAGAGGCTCCGTCTATGCAAGGGAGGGTGAGCAGGACGGAGATCTCTGGATGGAGTTGA
AA sequence
>Lus10001943 pacid=23182268 polypeptide=Lus10001943 locus=Lus10001943.g ID=Lus10001943.BGIv1.0 annot-version=v1.0
MAMPIISDDEEYYSPTSFKDKLKLSICCFTPIRHHHILHPDYDFDPSNTKPPPARSSQYHLEIKDRCRGFIIGRRSAGGGRNKRGHRSDYFRYDPESYSL
NFEEDGANREDDQLPFSSFAARLPATPERFTRIETWAEAPSMQGRVSRTEISGWS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11070 unknown protein Lus10001943
[exp]
0 1
AT5G35090 unknown protein Lus10001931
[exp]
1.0 0.9128
AT2G40000 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR ... Lus10040215
[exp]
5.5 0.8756
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10015496
[exp]
6.0 0.8801
AT3G07790 DGCR14-related (.1) Lus10006367
[exp]
9.5 0.8721
AT2G27260 Late embryogenesis abundant (L... Lus10005216
[exp]
9.6 0.8736
AT1G78080 AP2_ERF CAF1, RAP2.4, W... wound induced dedifferentiatio... Lus10020913
[exp]
9.9 0.8651
AT3G07790 DGCR14-related (.1) Lus10012321
[exp]
10.2 0.8482
AT2G40000 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR ... Lus10028275
[exp]
13.7 0.8582
AT1G01260 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) ... Lus10005966
[exp]
14.8 0.8661
AT1G09070 (AT)SRC2, (AT)S... soybean gene regulated by cold... Lus10029901
[exp]
15.3 0.8731

Lus10001943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.