Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 574 / 0 unknown protein AT2G12400 538 / 0 unknown protein AT1G80540 377 / 1e-124 unknown protein AT1G71110 377 / 1e-124 unknown protein AT5G67550 75 / 6e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001929 [exp] 584 / 0 AT2G25270 457 / 3e-156 unknown protein Lus10008028 [exp] 547 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 530 / 0 AT2G12400 616 / 0.0 unknown protein Lus10013492 [exp] 372 / 2e-122 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 335 / 3e-108 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 320 / 4e-103 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 316 / 1e-101 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 282 / 8e-89 AT2G25270 328 / 4e-107 unknown protein Lus10038102 [exp] 239 / 4e-72 AT2G25270 468 / 5e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023200 [exp] 665 / 0 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 648 / 0 AT2G25270 590 / 0.0 unknown protein Potri.018G120200 [exp] 561 / 0 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 547 / 0 AT2G12400 579 / 0.0 unknown protein Potri.010G115500 [exp] 366 / 2e-120 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 131 / 1e-32 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 128 / 2e-31 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001945 pacid=23182275 polypeptide=Lus10001945 locus=Lus10001945.g ID=Lus10001945.BGIv1.0 annot-version=v1.0 ATGATGTTCAGTGAAACCCATTTACTGAAGCTCACACCTCTGTTCTTTGCGTTCTTTGTTTTCCCAATATTGTTCCTCCCAAGCTTCTCTCATGCCTCTT TTCCTCCAGCTGGGTCGCCGGCGGCGGCGGAGCTCCCATGGAGGAGGTCAGCAGTAGAGATACCCAGCGAACCACCAATGGAAGTTTCTTCATCATCACC ACTTGTAGCTTTAGCAGCTGAACGGACTTACAGGAAAGACCCTCTTGCTGGCTTCAAACGTTACGATGGTGGCTGGAATATCAGCGACCGCCATTATTGG GCTTCTGCAGGATTCACAGCAGCTCCACTTTTCCTGGTAGCCTTAATCTGGTTTCTAGGGTTTGGAATCTGTTTACTGCTTGGATGCCTATGTCATTACT GCTTCAAGAAGCAGCTCCATGGCTATTCTCGAATAGCCTATGCACTCTCCCTCGTTTTCCTTGTCCTCTTCAGCATTGCTGCTATAATTGGTTGTATTGT GCTGTATAATGGTCAGGGCAAGTTCCATAGAAGCACAACACGAACATTGGAGTATGTTGTGAGTCAGGCCGATTCGACAGCCGAAAATCTGAAGAATGTG GATGATTATCTTGCCTCTGCCAAGCTACTTGGAGTTGATCAGGTGTTCCTTCCTGCCGATGTGCAAACTGACATTGACCAGATTGGTGGCAGAATCAACT CTTCTGCTAGCTTACTTTCCGAGAAATCGTCTGAGAACTCTGCTGACATCCAAGATCTTCTTGATTCTATGAGGCTGGCTCTGATCGTTGTAGCTGCCGT AATGCTTGTCCTGACATTCCTTGGATTGTTGTTCTCCATCTTTGGCATGCAGTCGCTAGTATCCATCCTAGTTGTTCTAGGATGGATACTTGTTGCAGGC ACATTCATTCTTTGTGGCATATTCCTCCTTCTTCACAATGTGGCGGGTGATGCTTGTGTTGCAATGGATCAATGGGTACAAAATCCATCTGCACACACAG CATTAGACGAGATCCTGCCATGCGTAGACAGCTCAACCGCACAAGAAACTCTGTCGAAAAGCAAGGAAGTGACATCCCAGCTTGCCGAGGTAGTGAACCA GGTGATCACCAACATGTCGAACATCAACTTCTCCCCCAACTTCAAGCCATTGTACATCAACCAATCCGGTCCGTTAGTCCCGATTCTCTGCAACCCGTTT CACGCTGACTTGACTGACCGCCCCTGCAGCCCTGGTGAAGTGGACCTCAATAATGCCACACAGGCGTGGAGCAGCTATGTATGTCAGGTTTCGCCATCGG GAATATGTGAAACAACAGGGAGATTGACACCGACTATATACAGCCAAATGGCGGCTACAGTCAATGTTAGCTACGGATTGATAAACTACGCACCGTTCTT GGTTGAATTAGAAGACTGCACATTTGCAAGGCAGACATTTGGTGAGATATACAGGGAACACTGTCCAGGTCTGAGGAAGTACAGCAGGGAGACATATATA GGGCTGGTGATAGTCTCCACTGCAGTTATGCTGTCCTTGATATTCTGGCTCATTTACGGGCGGGAAAGGCGACACAGCGCTGGTAGTAGAAATACCAAGC AGCAGCATCGAGGTGATGAATCCGCAGGTCACCAGGAGATGGAAGTTATACCAGAGAACAAGGAGCAGCACGGAGTTTGA
AA sequence Show only first row Show all	>Lus10001945 pacid=23182275 polypeptide=Lus10001945 locus=Lus10001945.g ID=Lus10001945.BGIv1.0 annot-version=v1.0 MMFSETHLLKLTPLFFAFFVFPILFLPSFSHASFPPAGSPAAAELPWRRSAVEIPSEPPMEVSSSSPLVALAAERTYRKDPLAGFKRYDGGWNISDRHYW ASAGFTAAPLFLVALIWFLGFGICLLLGCLCHYCFKKQLHGYSRIAYALSLVFLVLFSIAAIIGCIVLYNGQGKFHRSTTRTLEYVVSQADSTAENLKNV DDYLASAKLLGVDQVFLPADVQTDIDQIGGRINSSASLLSEKSSENSADIQDLLDSMRLALIVVAAVMLVLTFLGLLFSIFGMQSLVSILVVLGWILVAG TFILCGIFLLLHNVAGDACVAMDQWVQNPSAHTALDEILPCVDSSTAQETLSKSKEVTSQLAEVVNQVITNMSNINFSPNFKPLYINQSGPLVPILCNPF HADLTDRPCSPGEVDLNNATQAWSSYVCQVSPSGICETTGRLTPTIYSQMAATVNVSYGLINYAPFLVELEDCTFARQTFGEIYREHCPGLRKYSRETYI GLVIVSTAVMLSLIFWLIYGRERRHSAGSRNTKQQHRGDESAGHQEMEVIPENKEQHGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25270			unknown protein		Lus10001945 [exp]	0	1
AT2G25270			unknown protein		Lus10001929 [exp]	1.0	0.9512
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	1.4	0.9511
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	3.2	0.9265
AT2G39870			unknown protein		Lus10040247 [exp]	3.9	0.9295
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	4.7	0.9100
AT2G39870			unknown protein		Lus10004675 [exp]	4.9	0.9198
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	6.1	0.8778
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	6.6	0.9290
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	6.9	0.9253
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	7.1	0.8998

Compare expression of checked genes

Lus10001945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.