Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11090 158 / 2e-48 serine-rich protein-related (.1) AT5G25280 157 / 6e-48 serine-rich protein-related (.1.2) AT5G20370 68 / 4e-14 serine-rich protein-related (.1) AT1G67910 41 / 6e-05 unknown protein AT1G24577 40 / 7e-05 unknown protein AT3G13227 40 / 0.0003 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001928 [exp] 291 / 6e-101 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10039998 [exp] 160 / 2e-49 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 157 / 3e-48 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10006660 [exp] 145 / 2e-43 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 143 / 2e-42 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10008811 [exp] 59 / 1e-11 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 49 / 2e-07 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 40 / 0.0002 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 40 / 0.0002 AT1G67910 48 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023300 [exp] 193 / 2e-62 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G258600 [exp] 185 / 3e-59 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 140 / 1e-41 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.006G060800 [exp] 138 / 7e-41 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 62 / 2e-12 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 55 / 8e-10 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.002G250700 [exp] 44 / 1e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.008G186200 [exp] 40 / 0.0001 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 40 / 0.0002 AT1G67910 82 / 4e-22 unknown protein Potri.018G079200 [exp] 37 / 0.0008 AT1G67910 45 / 9e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001946 pacid=23182277 polypeptide=Lus10001946 locus=Lus10001946.g ID=Lus10001946.BGIv1.0 annot-version=v1.0 ATGGGGATGGATTCAAATTCTAAGAAACCTAGCGGTCCGGTGCTCCGGTCACTATCACCTTCCGCACGGTTTCCGTCATACGGATCCCGTTCTCACCTGT CTTCTTCCTCGTCAGCCTTCGCTTCTTCCACGAGCTCCGGTTTTTATTCGTCGCCGTCAGCCTTCTTCCGCAGCTCAGCTCCTCTTCAGAGATCCACCTC TCCGACGCGCGTCAATCTCTATTCCTCGAGTCCTCCATCACCCACCTTCCGTTTCTCCATCGATCGATCCACTTCTCCTAGCCGATCGATTACGGTCGCC ACCAAGCACATCAATCACATCTCCAGCCTCCCTAAGAAGAAGACGTGTATGTGCTCTCCGACGTCGCATCCGGGATCGTTCCGGTGTAGCCTCCACAAGA ACAGCAATCAAAGCAGCCACGGTGGTAATAGCAGCTCGTATACGCCCAACAGGTTGAACATGAGGAGATCCGCCATGGCGAACTCGGTGGTGAGAATCGG CGGTGTTGAGGGAGACTGGGTCAAGAGAGCACTGTCCGCCTTGATCCGGCCGTCTTCACATCAGCAGAGGAGGCGTGGGAACTTTCAGCAACGACCAAGC AGGCTCTCCGTCATGTCTAGAGCCGATGAGGGTTCTTAA
AA sequence Show only first row Show all	>Lus10001946 pacid=23182277 polypeptide=Lus10001946 locus=Lus10001946.g ID=Lus10001946.BGIv1.0 annot-version=v1.0 MGMDSNSKKPSGPVLRSLSPSARFPSYGSRSHLSSSSSAFASSTSSGFYSSPSAFFRSSAPLQRSTSPTRVNLYSSSPPSPTFRFSIDRSTSPSRSITVA TKHINHISSLPKKKTCMCSPTSHPGSFRCSLHKNSNQSSHGGNSSSYTPNRLNMRRSAMANSVVRIGGVEGDWVKRALSALIRPSSHQQRRRGNFQQRPS RLSVMSRADEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	0	1
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	1.7	0.8968
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	2.0	0.8544
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	2.4	0.8737
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	3.2	0.8537
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	3.5	0.8480
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	6.7	0.8726
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	6.7	0.8215
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	7.2	0.8296
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	9.2	0.8288
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	11.0	0.8329

Compare expression of checked genes

Lus10001946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.