Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 591 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 571 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 327 / 2e-100 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 309 / 4e-94 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 75 / 1e-14 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 65 / 2e-10 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 60 / 6e-09 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G25230 55 / 1e-07 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT1G53300 55 / 2e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G54010 53 / 5e-07 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001948 [exp] 1257 / 0 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001927 [exp] 1242 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 765 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 460 / 1e-152 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 457 / 6e-152 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 325 / 1e-99 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 320 / 4e-98 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 69 / 2e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 66 / 5e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258300 [exp] 686 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 664 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 535 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 331 / 4e-102 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 328 / 6e-101 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G100700 [exp] 73 / 7e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 72 / 2e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G105100 [exp] 61 / 3e-09 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.011G111500 [exp] 56 / 1e-07 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.002G248300 [exp] 55 / 2e-07 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10001947 pacid=23182260 polypeptide=Lus10001947 locus=Lus10001947.g ID=Lus10001947.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCAACGGGGAAGAAGACTTCAAATCCTCAATCGCCGAAAACTCCGAGAACCCCTAAAACCGACGGTAACGCTAAGCACCAGCAGAGCAAGC TAGCATCCGACAAATCTTCCAAAGCCTTTGATGAAGACACCGCAATCTTCATCACCATGGCGCAGGAGCTTAAAGAAGAAGGAAACAAGCTCTTCCAGAA GCGTGACCACGAGGGCGCGATGTTGAAGTACGAAAAGGCCGTCAAGCTACTCCCCAACAATCACATCGATGTCGCATCTCTCCGCACCAGCATGGCCGGT TGCTATATGCAGATGGGACTCGGTGAGTGTCCTCGAGCTATTAACCAGTGTAATTTGGCGCTGGAGGTTTCTCCAAAATATAGCAAGGCTCTGTTGAAGA GAGCTATCTGTTATGAGTCCTTGAATCGATTGGATTTAGCTTGGAGAGATGTTAATCGTGTTTTGTCCATGGAACCTAGTAATTCATCCGCTCTTGAGGT TTTGGCTAGTGTTAAGAAGTCTATGGCGGATCAGGGGTTGAGTTTTGATGAAAATTCCATTGGTTTGGATGATGAGGTTGAGAAGAAGAGTGGTATTGGT GCATCTCGTTTGCGCAAGGTGGTGAAAGAGAAGATCAAGAATAAGAAGAAGAAAGCTGATAAAGCTGAGGTTGTGGAGAAGAAGATAGATGATAAAGAAA AGGTACCGGTTGTTGAGGTGAAGAAAGCAACTCCTATCATTAACAAAAAGGATGTGGTTGTGAAGACCATTGATGTGAAGAAAGTGACTGGTAAGAAAGG TATTAAGGAAGAGAAAGCAATTGCTAAGACTGTGAAGTTGGTATTGGGGGAAGATATAAGGTGGGCGCAATTGCCTGCGAATTGTACTGTGGGATTGCTG AGGGATATTGTTGGTGATAGGTTTCCTGGCTTGAGAGGTGCTCTAATTAAATATAAAGATCAAGAAGGTGATTTGGTTACTATAACTACGACGGATGAGT TGAGGTTAGCTGAGGCATCCTGTGGTTCTCAAGGATCATCACTCAAGTTCCACATTGTTGAAGTTAGTTTGGATCTGGAGCCGAGTTACGAGCGACCAAA AGCTGATGAAAACGCAGTACTGATACACGAAAAGCAGAGTCATGATGTGGGAAGAAGCAATGATGTTGAAAAGGAGTCTGCTTCGGTTGATGATTGGATT ATCCAGTTTGCAAGGCTGTTCAAGAACCATGTCGGGTTTGATTCCGATTCTTATTTGGATATTCATGAACTGGGGATGAAATTCTACTCGGAGGCAATGG AGGATACTGTTACGAGCGAAGAAGCAGTAGAGTTGTTTGATATTGCTGCGGACAGGTTCCAGGAGATGGCAGCTTTGGCTTTGTTTAATTGGGGGAATGT TCACATGTCAAGGGCAAGGAAGAGAGTTTCTTTTCCAGAAGATGGATCCCGGGAGACCTTACTGGAACTGATGAAGAGTGCATATGAATGGTCAAAGACT GAATATAGAAAGGCTGGAGAGAGATATCACTTGGCCCTTAAACTAAAGCCGGATTTTTATGAAAGTCTTTTGGCACTTGGTCAGCAGCAGTTTGAGCAAG CTAAGCTTTGTTGGTACCATGCCACTGGAAGCAAGCTTGATTTAGAGAGTGGGCCGTCCGAGGAGGTGCTGGATCTTTACAATAGGGCCGAGGACTGCAT GGAGAGAGGTATGCAGATGTGGGAGGAGATGGAGGAGCAGCGCCAAAATGGGATCTCTAAGTTTGACAAGTATAAATCCCAGCTTACGAAATTGGGATTG GATGGTCTGTTGAAAGATGTGTCGGAAGAAGCTACGGAGCAGGCATCGAATATGAGCGCACAGATAAACCTCTTGTGGGGGACTATGTTGTATGAACGTT CTGTTGTGGAGTACAGGTTGGAGTTACCGACTTGGGAAGAATGTCTGGAAGTTGCCGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCGACAGATATAGC AGTTATGATCAAGAACCACTGTTCCAATGTTACAGCATTTGACGGTTTGAGCTTCAAAATCGATGAGATAGTGCAAGCATGGAATGAAATGTACGACGCT AAGAGGTGGGAGATAGGTGTTCCATCTTTTAGGTTGGAACCTTTGTTTCGTCGGCGAGCTCCAAAGCTTCATTATATGCTGGAGTCATATTGA
AA sequence Show only first row Show all	>Lus10001947 pacid=23182260 polypeptide=Lus10001947 locus=Lus10001947.g ID=Lus10001947.BGIv1.0 annot-version=v1.0 MGKPTGKKTSNPQSPKTPRTPKTDGNAKHQQSKLASDKSSKAFDEDTAIFITMAQELKEEGNKLFQKRDHEGAMLKYEKAVKLLPNNHIDVASLRTSMAG CYMQMGLGECPRAINQCNLALEVSPKYSKALLKRAICYESLNRLDLAWRDVNRVLSMEPSNSSALEVLASVKKSMADQGLSFDENSIGLDDEVEKKSGIG ASRLRKVVKEKIKNKKKKADKAEVVEKKIDDKEKVPVVEVKKATPIINKKDVVVKTIDVKKVTGKKGIKEEKAIAKTVKLVLGEDIRWAQLPANCTVGLL RDIVGDRFPGLRGALIKYKDQEGDLVTITTTDELRLAEASCGSQGSSLKFHIVEVSLDLEPSYERPKADENAVLIHEKQSHDVGRSNDVEKESASVDDWI IQFARLFKNHVGFDSDSYLDIHELGMKFYSEAMEDTVTSEEAVELFDIAADRFQEMAALALFNWGNVHMSRARKRVSFPEDGSRETLLELMKSAYEWSKT EYRKAGERYHLALKLKPDFYESLLALGQQQFEQAKLCWYHATGSKLDLESGPSEEVLDLYNRAEDCMERGMQMWEEMEEQRQNGISKFDKYKSQLTKLGL DGLLKDVSEEATEQASNMSAQINLLWGTMLYERSVVEYRLELPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNVTAFDGLSFKIDEIVQAWNEMYDA KRWEIGVPSFRLEPLFRRRAPKLHYMLESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	0	1
AT4G32070		Phox4	Phox4, Octicosapeptide/Phox/Be...		Lus10001948 [exp]	2.2	0.7928
AT2G36220			unknown protein		Lus10022709 [exp]	3.2	0.8106
AT1G45688			unknown protein		Lus10010232 [exp]	3.3	0.8351
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	4.6	0.8084
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	6.9	0.7942
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	10.5	0.7761
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	10.9	0.7904
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	12.0	0.7561
AT3G52710			unknown protein		Lus10022708 [exp]	13.5	0.7675
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	17.2	0.7897

Compare expression of checked genes

Lus10001947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.