Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32070 582 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 574 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT5G20360 324 / 5e-99 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 308 / 1e-93 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 75 / 1e-14 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 66 / 7e-11 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 61 / 2e-09 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 57 / 6e-08 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G54010 56 / 6e-08 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT3G25230 55 / 1e-07 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001947 [exp] 1258 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 1247 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 740 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 446 / 4e-147 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 444 / 3e-146 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 322 / 3e-98 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 318 / 8e-97 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 72 / 1e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 70 / 5e-12 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258300 [exp] 673 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 650 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 514 / 4e-173 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 328 / 6e-101 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 325 / 1e-99 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G100700 [exp] 75 / 2e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 72 / 1e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G105100 [exp] 61 / 3e-09 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.011G111500 [exp] 57 / 4e-08 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.002G248300 [exp] 55 / 1e-07 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10001948 pacid=23182273 polypeptide=Lus10001948 locus=Lus10001948.g ID=Lus10001948.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCAACGGGGAAGAAGACTTCAAATCCTCAATCGCCGAAAACTCCGAGAACCCCTAAAACCGACGGTAACGCTAAGCACCAGCAGAGCAAGC TAGCATCCGACAAATCTTCCAAAGCCTTTGATGAAGACACCGCAATCTTCATCACCATGGCGCAGGAGCTTAAAGAAGAAGGAAACAAGCTCTTCCAGAA GCGTGACCACGAGGGCGCGATGTTGAAGTACGAAAAGGCCGTCAAGCTACTCCCCAACAATCACATCGATGTCGCATCTCTCCACACCAGCATGGCCGGT TGCTATATGCAGATGGGACTCGGTGAGTGTCCTCGAGCTATTAACCAGTGTAATTTGGCGCTGGAGGTTTCTCCAAAATATAGCAAGGCTCTGTTGAAGA GAGCTATCTGTTATGAGTCCTTGAATCGATTGGATTTAGCTTGGAGAGATGTTAATCGTGTTTTGTCCATGGAACCTAGTAATTCATCCGCTCTTGAGGT TTTGGCTAGTGTTAAGAAGTCTATGGCGGATCAGGGGTTGAGTTTTGATGAAAATTCCATTGGTTTGGATGATGAGGTTGAGAAGAAGAGTGGTATTGGT GCATCTCGTTTGCGCAAGGTGGTGAAAGAGAAGATCAAGAATAAGAAGAAGAAAGCTGATAAAGCTGAGGTTGTGGAGAAGAAGATAGATGATAAAGAAA AGGTACCGGTTGTTGAGGTGAAGAAAGCAACTCCTATCATTAACAAAAAGGATGTGGTTGTGAAGACCATTGATGTGAAGAAAGTGACTGGTAAGAAAGG TATTAAGGAAGAGAAAGCAATTGCCAAGACTGTGAAGTTGGTATTGGGGGAAGATATAAGGTGGGCGCAATTGCCTGCGAATTGTACTGTGGGATTGCTG AGGGATATTGTTGGTGATAGGTTTCCTGGCTTGAGAGGTGCTCTAATTAAATATAAAGATCAAGAAGGTGATTTGGTTACTATAACTACGACGGATGAGT TGAGGTTAGCTGAGGCATCCTGTGGTTCTCAAGGATCATCACTCAAGTTCCACATTGTTGAAGTTAGTTTGGATCTCGAGCCGAGTTACGAGCGACCGAA AGCTGATGAAAATGTAGTACTGAAAGACGAAAAGCCGAGTCATGATGTTGGAAGAAGCAGTGATGTTGAAAAGGGGTCTGCTTCAGTTGATGATTGGATT ATCCAGTTTGCAAGGCTGTTCAAGAACCATGTCGGGTTTGATTCCGATTCTTATTTGGATATTCATGAACTGGGGATGAAATTCTACTCGGAGGCAATGG AGGATACTGTTACGAGCGAAGAAGCAGTAGAGTTGTTTGATATTGCCGTGGACAGGTTCCAGGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGT TCACATGTCAAGGGCAAGGAAGAGAGTTTCTTTTCCAGAAGATGGATCCCGGGAGACCTTACTGGAACTGATGAAGAGTGCATATGAATGGTCAAAGACT GAATATAGAAAGGCTGGAGAGAGATATCACTTGGCCCTTAAACTAAAGCCGGATTTTTATGAAAGTCTTTTGGCACTTGGTCAGCAGCAGTTTGAGCAAG CTAAGCTTTGTTGGTACCATGCCACTGGAAGCAAGCTTGATTTAGAGAGTGGGCCGTCCGAGGAGGTGCTGGATCTTTACAATAGGGCCGAGGACTGCAT GGAGAGAGGTATGCAGATGTGGGAGGAGATGGAGGAGCAGCGCCAAAATGGGATCTCTAAGTTTGACAAGTATAAATCCCAGCTTACGAAATTGGGATTG GATGGTCTGTTGAAAGATGTGTCGGAAGAAGCTACGGAGCAGGCATCGAATATGAGCGCACAGATAAACCTCTTGTGGGGGACTATGTTGTATGAACGTT CTGTTGTGGAGTACAGGTTGGAGCTACCAACTTGGGAAGAATGTCTGGAAGTTGCCGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCGACGGATATAGC AGTTATGATCAAGAACCACTGTTCCAATGTTACAGCATTTGACGGTAAAGCATATAATTCTTCAGACTCACAATCTAGTTCTGCAATTTCCGACGTACTT TTTTCAGACTATTGGAACTTTACCGCTTTTGCAGGTTTGAGCTTCAAAATCGATGAGATAGTGCAAGCATGGAATGAAATGTACGACGCTAAGAGGTGGG AGATAGGTGTTCCATCTTTTAGGTTGGAACCTTTGTTTCGTCGGCGAGCTCCAAAGCTTCATTATATGCTGGAGTCATATTGA
AA sequence Show only first row Show all	>Lus10001948 pacid=23182273 polypeptide=Lus10001948 locus=Lus10001948.g ID=Lus10001948.BGIv1.0 annot-version=v1.0 MGKPTGKKTSNPQSPKTPRTPKTDGNAKHQQSKLASDKSSKAFDEDTAIFITMAQELKEEGNKLFQKRDHEGAMLKYEKAVKLLPNNHIDVASLHTSMAG CYMQMGLGECPRAINQCNLALEVSPKYSKALLKRAICYESLNRLDLAWRDVNRVLSMEPSNSSALEVLASVKKSMADQGLSFDENSIGLDDEVEKKSGIG ASRLRKVVKEKIKNKKKKADKAEVVEKKIDDKEKVPVVEVKKATPIINKKDVVVKTIDVKKVTGKKGIKEEKAIAKTVKLVLGEDIRWAQLPANCTVGLL RDIVGDRFPGLRGALIKYKDQEGDLVTITTTDELRLAEASCGSQGSSLKFHIVEVSLDLEPSYERPKADENVVLKDEKPSHDVGRSSDVEKGSASVDDWI IQFARLFKNHVGFDSDSYLDIHELGMKFYSEAMEDTVTSEEAVELFDIAVDRFQEMAALALFNWGNVHMSRARKRVSFPEDGSRETLLELMKSAYEWSKT EYRKAGERYHLALKLKPDFYESLLALGQQQFEQAKLCWYHATGSKLDLESGPSEEVLDLYNRAEDCMERGMQMWEEMEEQRQNGISKFDKYKSQLTKLGL DGLLKDVSEEATEQASNMSAQINLLWGTMLYERSVVEYRLELPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNVTAFDGKAYNSSDSQSSSAISDVL FSDYWNFTAFAGLSFKIDEIVQAWNEMYDAKRWEIGVPSFRLEPLFRRRAPKLHYMLESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32070		Phox4	Phox4, Octicosapeptide/Phox/Be...		Lus10001948 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	2.2	0.7928
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	11.2	0.7434
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	15.3	0.7450
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	50.1	0.7320
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	58.2	0.7213
AT5G42860			unknown protein		Lus10010231 [exp]	60.2	0.7010
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	65.7	0.7038
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	77.1	0.7098
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	79.5	0.7067
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	81.1	0.7138

Compare expression of checked genes

Lus10001948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.