Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08550 655 / 0 ILP1 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) AT5G09210 291 / 4e-87 GC-rich sequence DNA-binding factor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001926 [exp] 1378 / 0 AT5G08550 828 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002600 [exp] 830 / 0 AT5G08550 692 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Potri.006G020200 [exp] 100 / 2e-24 AT5G08550 73 / 2e-15 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Potri.006G020400 [exp] 97 / 3e-23 AT5G08550 69 / 3e-14 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07842 [flax] [poplar] GCFC GC-rich sequence DNA-binding factor-like protein
Representative CDS sequence Show only first row Show all	>Lus10001949 pacid=23182263 polypeptide=Lus10001949 locus=Lus10001949.g ID=Lus10001949.BGIv1.0 annot-version=v1.0 ATGAGCTCCTCCAACAGCAAATCGCGAAACTTTCGCCGTCGGCTGGACGACGAAGACTCTAGCTCAACTGACCCTTCCGCCGCCATCCCTTCACCGCCCA CCGTCCGCAGACCTCAACCACCTTCTTCCTCAGCTTCCAAGCCTAAGAAGCTCCTTAGTTTCGCCGACGACGAAGGCGATGAAGGTGCTGTAACTCCTCT CAATCATTCTTCTCTCTCTAAGTCTTCTTCTTCTTCTAGCCGGCGAAAGCCTCCTCCTCCTCCTTCTTCTTCCGGTTCTTCTTCTAGACTCGGCAGGCCT AGTTCTGCACACAAGCTCACCGCATCCAGAGACCGAGCTCCTCCTCTTAGCTCCTCCGCTACGACTTCCAATGTTCTTCCTCAGGCCGGAACTTACACCA AAGAAGCCATTCTCGAGCTTCAGAAGAACACCCGCACTCTAGCCAAACCTTCCCCAAAGCCTTCTCCTTCCTCTGAGCCTAGGATCATTCTTAGAGGCCT TGTCAAGCCTGCTGCTCCGTCGCCAAACCAAACCCTAGAAACTCACCCGAACTCTATCATAGACAATGATGATGATGACGATGAAGACGTCCAAGCTGTG TCTGACGCCAATACTCGATTGGCATCAATTGGGTTGATGAAATCCGTACCCCATGATGACTATCCCGATCCTGAAACCATTAGGAAGATTAGAGCCGAGA GAGAAAAGAAGAGGCAGTCTAGAGCTTCTGCGGCTGACTTCATTCCCCTTAATGGACCTTCTCACGCTGAAGCTGAAGGGTCCAGTGACGACGACGAGCT TGAGCTTAGAACTCGTGTAGCTATGGTTGGCAAAAAGGAAAGCAAAACTCATGGCGTCTTTGAGGATGTTGACTCTAGTACTGCTGCTTCGGCCAGATAT ATGAATTCTCAGACCTCGGTGAATGAGATTGCTGATGAAGTTGATGATGAGGATGAAGAGGACAAGATTTGGGAAGAAGAGCAGTTTAGGAAGGCCTTGG GGAAGAGAATGGATGATAATTCTGCTACTACTCGAGTCGTTTCTGTTGGTGTTGGTACTAATGCTACTGCCACGATGCAGCAGCCTTCATTGCAGCATAG GGCCAGCAGTGCATATCCAAACATTGGAGGGGTTCTTGGGGCAGCTCAACGGCTGGATACCCTGACCATTCAACAACAAGCAGGGATTGCTTTGAAGGCA TTGCAGGATAATTCCAGGAAGCTTCAGGAATCTCATGATAGAACAGTTTCAACACTGGCAAAAACTGACGAGAACTTATCTGCCTCGCTGGATAATATTA CTTCTCTTGAAGCCTCGTTGTCTGCTGCTGGTGAGAAGTTCATCTTTATGCAAAGTCTCCGTGACTTTGTTTCTGTTTTATGTGAATTTTTGCAGCATAA AGCCCCATTCATAGAGGAGCTTGAAGAGCGAATGCAGAAGGTTCAACAGAAACGGGCAGCAGCCGTTTTGGAAAGAAGAAGTGCTGATAATGATGATGAA ATGGTGGGGGTAGATGCTGCTGTTAAAGCAGCAATGTCAGTCTTCAGGGAACGTGGAAATACTGCAATGATGATCGCTGCTGCTGCAAGTGCAGCCCAGA CAGCTTCAGCTTCTGTGAAAGAGCAAGCTACTCAACCAGAATTAGATGAACTGGGTAGGGATATGAGTAGACAAAAGAATATGGAGATGAAACGGAGGGC TGAAGCACGACAACGAAGAAGATCCAAGTTTGATTCAAAGAGATTTTCATGCATGGAAGTTGACAACTCTGATCAGAAAATAGAAGGAGAATCAAGCACT GACGAGAGCGAGAGTGAAAGTGAAGCTTACCGGTCTAGTCGCGATATGTGCCTACAAACTGCTGGTCAAATTTTAAGTGATGCTTCCGAAGAATTTTCCC AGTTGCAATTGGTGAAAGAAAGATTAGAGAATTGGAAAATTAAGTATGCAGCTAGCTACAGAGATGCTTACATGTCACTCAGTATACCAGCACTCTTCTC TCCTTATGTGAGGCTGGAGCTTCTACAGTGGGATCCATTGGACAAGGCTGATTTCTCACACATGAAATGGCATTCTCTGTTATTCGACTATGGTGTACCA GAGGGTGCATCTGATTTGAATCCCGACGATGCTGACAGTAATCTCGTACCACAACTGGTAGAAAAAGTAGCTCTTCCCAAATTGCATCACCAAATCGTCC ACTGTTGGGACACACTTAGTACACTTGAAACGGAGAATGCCGTTGCTGCCACAAGCTTGGTCATCGATTACGTTCCAGCCTCAAGTCAGGCTCTAGCAGA GCTATTAGTTGCAATCCGTACCCGTCTCGCTGATGCTGTAGCTGACATCATGGTTCCAAACTGGGACTCGCTTGTCCTTAAGGCAGTGCCAAGTGCTGCA CAAGTTGCAGCCTATCGTTTTGGAGTGTCTGTCCGTTTGATAAGGAACATCTGCTTGTGGAAGGATATTCTTGCTTTGCCGGTTCTCGAGGAGCTCGCGC TTAATGAGCTTTTACGGAGGAAGGTGCTACCCCATGTTCAAAGCATTTCGTCGGATGTTCATGATGCCGTTGCCAGAACGGAGAGGATCGTTGCTTCTCT GACTGGAGTGTGGGCAGGTCCAAACGTCACTGGGGATCGCAGTGGCAAGTTGCAGTCAGTGGTGGACTTTGTGGTGTCCCTAAGAAGGGCGTTGGAGAAG AAGCAGGCGGCGTCTGGACTGAGCGAGGGGGAGAGTAATGGACTTGCGAGACGGTTGAAGAAGCTGCTGGTTGAGCTCAACGACTACGACAATGCCCGAG GCGTCGCGAAGACCTTTCGGTTGAAGGAGGCTTTGTAA
AA sequence Show only first row Show all	>Lus10001949 pacid=23182263 polypeptide=Lus10001949 locus=Lus10001949.g ID=Lus10001949.BGIv1.0 annot-version=v1.0 MSSSNSKSRNFRRRLDDEDSSSTDPSAAIPSPPTVRRPQPPSSSASKPKKLLSFADDEGDEGAVTPLNHSSLSKSSSSSSRRKPPPPPSSSGSSSRLGRP SSAHKLTASRDRAPPLSSSATTSNVLPQAGTYTKEAILELQKNTRTLAKPSPKPSPSSEPRIILRGLVKPAAPSPNQTLETHPNSIIDNDDDDDEDVQAV SDANTRLASIGLMKSVPHDDYPDPETIRKIRAEREKKRQSRASAADFIPLNGPSHAEAEGSSDDDELELRTRVAMVGKKESKTHGVFEDVDSSTAASARY MNSQTSVNEIADEVDDEDEEDKIWEEEQFRKALGKRMDDNSATTRVVSVGVGTNATATMQQPSLQHRASSAYPNIGGVLGAAQRLDTLTIQQQAGIALKA LQDNSRKLQESHDRTVSTLAKTDENLSASLDNITSLEASLSAAGEKFIFMQSLRDFVSVLCEFLQHKAPFIEELEERMQKVQQKRAAAVLERRSADNDDE MVGVDAAVKAAMSVFRERGNTAMMIAAAASAAQTASASVKEQATQPELDELGRDMSRQKNMEMKRRAEARQRRRSKFDSKRFSCMEVDNSDQKIEGESST DESESESEAYRSSRDMCLQTAGQILSDASEEFSQLQLVKERLENWKIKYAASYRDAYMSLSIPALFSPYVRLELLQWDPLDKADFSHMKWHSLLFDYGVP EGASDLNPDDADSNLVPQLVEKVALPKLHHQIVHCWDTLSTLETENAVAATSLVIDYVPASSQALAELLVAIRTRLADAVADIMVPNWDSLVLKAVPSAA QVAAYRFGVSVRLIRNICLWKDILALPVLEELALNELLRRKVLPHVQSISSDVHDAVARTERIVASLTGVWAGPNVTGDRSGKLQSVVDFVVSLRRALEK KQAASGLSEGESNGLARRLKKLLVELNDYDNARGVAKTFRLKEAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	0	1
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	11.0	0.8236
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10016360 [exp]	15.7	0.7999
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	15.7	0.8015
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	18.3	0.7644
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	20.6	0.8150
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	21.5	0.8134
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	26.8	0.7827
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	28.4	0.7700
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	30.2	0.8124
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	31.0	0.7637

Compare expression of checked genes

Lus10001949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.