Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25280 454 / 4e-163 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001925 [exp] 541 / 0 AT2G25280 492 / 7e-178 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023700 [exp] 471 / 1e-169 AT2G25280 429 / 7e-153 unknown protein Potri.006G258200 [exp] 457 / 5e-164 AT2G25280 439 / 5e-157 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0283 [flax] [poplar] LigB PF01875 [flax] [poplar] Memo Memo-like protein
Representative CDS sequence Show only first row Show all	>Lus10001950 pacid=23182266 polypeptide=Lus10001950 locus=Lus10001950.g ID=Lus10001950.BGIv1.0 annot-version=v1.0 ATGGAGATCGTCAGAAGAGCATCTCATGCTGGCTCATGGTACACCGATAATCCGAGAGAGCTAGAAGAAGAGCTTGATGGGTGGCTGAATGCTGCTGGAC TGCCGAAATCACCTGACGTTCGTGGAGTCATTGCTCCGCACGCAGGTTACTCATATTCTGGCCGTGCAGCTGCTTATGCATTTGGAAACATAGATCCCAC CAACATTTCTCGGATATTCCTTCTCGGCCCATCTCACCACTTTTATACTCCCAACTGTGCTCTTTCAAGAGCAACAGTGTACAAGACACCAATTGGGGAC TTACCTATTGATCAGGAAGTGATTGAGGAGCTTAAGGCTACAGGTAAATTCGAGTTGATGGATCTCCGAGTTGACGAGGCAGAGCATAGCATGGAGATGC ACTTACCTTATCTTGCCAAATTCTTTAAAGGGCACCAAGTGAAGGTTGTGCCGATTCTGGTCGGTGCTTTAAATGCGGAGAACGAAGACATGTACGGGAA GTTGTTAGCAAACTACATAAATGACCCCAAAAACTTCTTTTCGGTATCTTCAGATTTCTGCCACTGGGGTACACGGTTCAATTATACTCACTATGATCGA GAACACGGTGCAATATACAAATCTATCGAGGCACTGGATAAGATGGGCATGGATATAATCGAGACTGGAGACCCGGATTCGTTCAAGCAGTATCTGCTGG AATATGACAATACCATCTGTGGACGTCACCCGATTGGTGTTTTCCTCCATATGCTGAAGAATTGCTCAGCAAAGATTAAGATAAACTTCCTCCGTTACGA GCAGTCTAGCCAGTGCAAGACTACAAGGGATAGTAGCGTCAGCTATGCATCTGCGGCAGCAAAGCTGGACTGA
AA sequence Show only first row Show all	>Lus10001950 pacid=23182266 polypeptide=Lus10001950 locus=Lus10001950.g ID=Lus10001950.BGIv1.0 annot-version=v1.0 MEIVRRASHAGSWYTDNPRELEEELDGWLNAAGLPKSPDVRGVIAPHAGYSYSGRAAAYAFGNIDPTNISRIFLLGPSHHFYTPNCALSRATVYKTPIGD LPIDQEVIEELKATGKFELMDLRVDEAEHSMEMHLPYLAKFFKGHQVKVVPILVGALNAENEDMYGKLLANYINDPKNFFSVSSDFCHWGTRFNYTHYDR EHGAIYKSIEALDKMGMDIIETGDPDSFKQYLLEYDNTICGRHPIGVFLHMLKNCSAKIKINFLRYEQSSQCKTTRDSSVSYASAAAKLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25280			unknown protein		Lus10001950 [exp]	0	1
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	2.0	0.9263
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	2.0	0.9177
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	2.4	0.9059
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	6.7	0.9068
AT1G11360			Adenine nucleotide alpha hydro...		Lus10033749 [exp]	7.1	0.8923
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	7.3	0.9157
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	7.5	0.8997
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	8.0	0.9069
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	10.0	0.8892
AT1G12400			Nucleotide excision repair, TF...		Lus10006998 [exp]	13.0	0.8719

Compare expression of checked genes

Lus10001950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.