Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16830 909 / 0 TPR2 TOPLESS-related 2 (.1) AT1G80490 757 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 746 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 699 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT5G27030 665 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 192 / 1e-50 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 57 / 2e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 52 / 2e-06 Coatomer, beta' subunit (.1.2) AT5G13840 50 / 6e-06 FZR3 FIZZY-related 3 (.1.2) AT3G15980 50 / 1e-05 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001924 [exp] 1909 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 717 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10023119 [exp] 701 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 676 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 672 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10029876 [exp] 658 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 658 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 635 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 611 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023800 [exp] 1078 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G258100 [exp] 1018 / 0 AT1G80490 1211 / 0.0 TOPLESS-related 1 (.1.2) Potri.013G081300 [exp] 907 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.003G030000 [exp] 758 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 752 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 738 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 736 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G128000 [exp] 723 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 701 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.005G021700 [exp] 653 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001951 pacid=23182271 polypeptide=Lus10001951 locus=Lus10001951.g ID=Lus10001951.BGIv1.0 annot-version=v1.0 ATGTCGACTCTCTGTAAGGAGCTGGTCTTCTTGATGCTGCAGTTCCTAGAAGAAGAAGGCTGGAAAGAGGCTGCTAGAGCGCTTGAGCGGAATAGCGGGT ATTTCTTCAACATGGAGCATTTCGAGGAGTTGGTTCTGAAGGGAGACTGGGTTGGGGCTGAGGATTATATTTACGGGTTCACCAAGTTTGGTGACAATAA GCACTCAACCAAGATTTATTTTGAAATGAGGAAGCATAATTTCCTTGAGGCATTAGATAACAATGATAGAGCCAAGGCTTTAGACATTCTTGTCAAGGAT CTGAAGGTTTTTGCCCCTGAAAACCAGGAGCTAGTTAAGGAATTGACGCAGCTTTTGATCTTAGACAACTTAAGGGAGCATGGGTCACTCTCGATGTATG GTGATACTGAGGTTGCAAGAGCAATTGTGATGCGAGAACTCCAGAAACTCATCAGAGCAAATCCCATCTTTAAGGGAAAAGTTGATTTTCCCTGCATCCG AGGTCATAGGTTAAGACGCATTGTAAACCAGAGCTTGAATTGGCAGCATTTACAATGTAAAAATCCTCAACCCGAGCCTAATATTAGAACTCTCTTTGCG GATCATGTGTGTTCACCTCCGGATGAACATGCACCTTTGGCCGTGAATGCTGTTATTTCTCAGTCTACTTCTGCTAGTTCGACATCAACTGTTAATGACT CTGGAATCTCTGGCATCACTTCGTGTCCTGATGAGTCTGAGGCGGCTGAGTTTGCATCCAAAAAACTTTTGTGTGGTACTGTTGATAAGGAAGCACAAAA TGTCACCCTCTCTAGTCAAGCTTCTTTGATATCTCCTATCGGTGTCTGTAGGAATCGTATGGATAACACTGTAGTTGGGAGTTGTGGACTGACAAGCACC GCTGACTTGCCAACTATTGTCGCAAGAAAACTGACTGAAGACTCGTCTCCAACAAGCATGGACTTTCATCCTGTTCAGCATACTCATCTATTAGTTGGAA CCAACACGGGGGATATAGGTTTGTGGGATGTTGCTTCTGGTGAAAAACTGATCACAAGTAACTTCAAGGTTTGGGATATAAGTGCCTGCACAAGGGTTTT CAAGACTGCTTTGGTCAGAGATCCACGTGTTGCGGTCAACCGTGTTACTTGGAGCCAGGATGGTTCTCTTTTGGGGGTTGCATATTCAAAACACATTGTG CACATATATGCTTATCATGGTGGCTCTGACATACGGCAGCGATTGGAAATTGATGCTCATATTGGTGGTGTCAATGATCTTGCATTTGCCAAACCCCATA AACTAGCTCTGATCATAACGTGTGGTGATGACAGAACAATTCAGGCATGGGACGTGACCGACGGTAGGAGGATGTATAAATTCGAAGGACATCACTCATC AGTGTATTCACTCTGCCCCCACAGCAAGGACAGCGTTCATTTCTTTTTTTCAACTTCAGTGGATGGGAACATAAAAATATGGCTATATGGTGATTCGGAT CCTAGAGTTAATTATGAGGCTCCTGGTCTGGCAAGTACATCACTGGCTTACTCCACTGATGGCAGAAGGCTTTTTTCTTGTGGAACCAGTAAATCTGGGG AGTCATTCCTTGTTGAATGGGATGAGAGTGAAGGGGCTATCAAAAGAAATTACCATGGATTGCAGAAGAGCTCTTTGGGTGCAGTTAAGTTTGACATAAT GAAGAATCAGTTTTTGGCTGCTGGCAATGAGCATCTGATTAAATTTTGGAGTTTGAACAATGATATTCACATGACAGCTATTGATGCAGAGGGAGACTTA CCTGAAAATCCACATATCCGATTCAACAAGGACAGCACTCTCCTGGCTGTTTTTGCAAAGGAAAATAAAATTAAGATCTTGGCAAGCAATAGTGGTCTTC AGTTGCTTGGTATATGCAGAAGTGGCTCTGATGACTTCTGGAGAATTGGCGGGGAGCAAGGACGTTTAGTAGACACGGAGGCTGTTAGAAATACATCTCT TGAAATGAACAGACCACCTCGTTTCAAAGCCCCAGTGCTCCCCTGCCATGTGAAAGTAGAGAAGATATCAAAATTGATTTACGGGAGTTCAGGTAATGCT ATTTTGGCATTAGCATCGAACGGCACTCATTTGTTATGGAAATGGCCAGTTATCGACCACAATTTGATTGGGCAGGTAACTACTGAAGTTCTTCCACAAC TATGGAAACCAAAGAACTCCTCAGCGACGATGAAGAATGATCTGACTGAAAATCCTGAGGCTTTACCATGTTTTGCATTGTCAAAGAACGATTGCTATCT CATATCAGCATCGGGCGGGAAAATTTCCCTTTTCAATATGTTGACATTCAAGACTATATCATTTGTCGCGCCATCAAAAGCAGCAGCTACATGCCTTGCT TTCCACCCGAAAGATAACAACATTATTGCTGTCGGAAGGGACGACTGCACAATTCTCATCCATAATGTCCGTTTGGACAAGTGTATTGATGTACTCTATG GCCATACGGGAAGGATCTCTGGGCTGGCCTTCTCAACTTCTCTCAATAAAATGGTATCTTCTGGAGCAGATGCTCAGATTACTATATGGAATGCCGAAAG TTGGGAAAGAGAAGGAAGCAGAATTTTAAAGATTCCAGATAGAGTCAAGTCAGACTCGGATACTTACGTCGAATTTCACCCCAACCAAGCGCGATGCCTT GCCGTGCACAGAGCCTATATGGGAGTCTTTGTTACCGCCCACGGCTTGGATTGTGTTGCGGAGTGGATTCCGGGAGGCTCGCTCCCCATTTCTCAGGCAA CATTTTCATGCGATGGCCGCAAAATATATGTCGGGCTTATGGATGGGAGTGTAGCCATATATGCTTCTTCATCTCTTGAGTTCCGTTGTTGGATTCCTAC TAGGGTGGGTGAGTATCCGGTGAGCATCGCAGCTCACCCTCAGAAACCGCACCAGTTTGCAGTAGGATACACCGGTGGTGAAGTTGCGGTGGTTGAGCCC CAAGGTCCTGATACCGAATCATGGATGAACGATGACAATGATGAGGTTTCGTCAGCAACCAACAAAACCGGCTGTTGA
AA sequence Show only first row Show all	>Lus10001951 pacid=23182271 polypeptide=Lus10001951 locus=Lus10001951.g ID=Lus10001951.BGIv1.0 annot-version=v1.0 MSTLCKELVFLMLQFLEEEGWKEAARALERNSGYFFNMEHFEELVLKGDWVGAEDYIYGFTKFGDNKHSTKIYFEMRKHNFLEALDNNDRAKALDILVKD LKVFAPENQELVKELTQLLILDNLREHGSLSMYGDTEVARAIVMRELQKLIRANPIFKGKVDFPCIRGHRLRRIVNQSLNWQHLQCKNPQPEPNIRTLFA DHVCSPPDEHAPLAVNAVISQSTSASSTSTVNDSGISGITSCPDESEAAEFASKKLLCGTVDKEAQNVTLSSQASLISPIGVCRNRMDNTVVGSCGLTST ADLPTIVARKLTEDSSPTSMDFHPVQHTHLLVGTNTGDIGLWDVASGEKLITSNFKVWDISACTRVFKTALVRDPRVAVNRVTWSQDGSLLGVAYSKHIV HIYAYHGGSDIRQRLEIDAHIGGVNDLAFAKPHKLALIITCGDDRTIQAWDVTDGRRMYKFEGHHSSVYSLCPHSKDSVHFFFSTSVDGNIKIWLYGDSD PRVNYEAPGLASTSLAYSTDGRRLFSCGTSKSGESFLVEWDESEGAIKRNYHGLQKSSLGAVKFDIMKNQFLAAGNEHLIKFWSLNNDIHMTAIDAEGDL PENPHIRFNKDSTLLAVFAKENKIKILASNSGLQLLGICRSGSDDFWRIGGEQGRLVDTEAVRNTSLEMNRPPRFKAPVLPCHVKVEKISKLIYGSSGNA ILALASNGTHLLWKWPVIDHNLIGQVTTEVLPQLWKPKNSSATMKNDLTENPEALPCFALSKNDCYLISASGGKISLFNMLTFKTISFVAPSKAAATCLA FHPKDNNIIAVGRDDCTILIHNVRLDKCIDVLYGHTGRISGLAFSTSLNKMVSSGADAQITIWNAESWEREGSRILKIPDRVKSDSDTYVEFHPNQARCL AVHRAYMGVFVTAHGLDCVAEWIPGGSLPISQATFSCDGRKIYVGLMDGSVAIYASSSLEFRCWIPTRVGEYPVSIAAHPQKPHQFAVGYTGGEVAVVEP QGPDTESWMNDDNDEVSSATNKTGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	0	1
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10036025 [exp]	6.5	0.8182
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	6.9	0.7701
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	7.2	0.8205
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	10.3	0.8225
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	21.1	0.7836
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	25.2	0.7591
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	28.7	0.7585
AT5G38880			unknown protein		Lus10035250 [exp]	33.7	0.6741
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	44.5	0.7304
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	45.7	0.7547

Compare expression of checked genes

Lus10001951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.