Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 149 / 8e-42 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 115 / 1e-28 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 105 / 3e-25 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001923 [exp] 143 / 1e-38 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 128 / 4e-33 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10038109 [exp] 128 / 4e-33 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 128 / 6e-33 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10037110 [exp] 111 / 4e-27 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 109 / 2e-26 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 108 / 3e-26 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 102 / 4e-24 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 102 / 6e-24 AT5G07830 690 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024200 [exp] 197 / 3e-58 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 158 / 7e-44 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G121500 [exp] 158 / 7e-44 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 112 / 2e-27 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 106 / 3e-25 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001952 pacid=23182276 polypeptide=Lus10001952 locus=Lus10001952.g ID=Lus10001952.BGIv1.0 annot-version=v1.0 ATGGAGACTGTGCTCTGCTCTGGCAATGTCGTCCCAGCGAGGAATCTCTGCTCTGCAGTGGAAGCTATCATACTAGAAACTGCCGTCGCTGCTGCCGGCT CTCTTCTTTGCTCGCTTCTCATGGTAGATTTACTCTCTGCTATTGTTTTCCCTCTCTATCTCCAGTTTATTTTGGCTTCAGCCTACTTCACAGTTCCTTT TGACAATCCTGGATCCGAGGATCTCGACGGTGATTCTTCCCCTTTCAGCGGACTCCAAGGTGTTCTGAATAACGCCGGGAGTCCAGCTGTGGCTTGGGTT GGTGAGGCAGGAGGTGCTTACAACAGTACTGGCCGTAACCTCGTCACTAATGCGTTTGTGTTCAGTTTCTGGTATTTGGACCAGCTAGCTAGGAATGGCT GCTGCATCATACGACACCAAAACTTACAGCCGGCAATCATTAGTCGGCGGCAATTATGGCCTTCTCGACACAACCACCTTTGTCCCCAACCTAGACTACT ATATATAGGTGAGCTTACGTTGCAACCATGCAATTTTGAAATCAGCTTTTCCTCTACTTACTCAGTATTTTGTTTGTGCCCTCTGTTGACAAGTGCACTA CTTTGGCACCATTTGATGGGAAGATCTGTGCTCCCCGTTAGTTTCTCTGGAACCAAACAAATACGAGCTTATGTTCACTGTTCAAAGACTTCTCAAGGAA TCACATTACTGTTGATCAATCTTGACAGCAACGCTACGGTCAGTATTCGCGTTTCAAACAAAGATGTCGTCCCCTCTCCTACAGCTGTCAAACACTATCA GAGTCGAAAAAAAAACTTTGCTAGGATGGGGAGATCAGGTTCCAAGATGGATGTGGATACTGTTTCTGAAACTATATCTCAGTTGGAACCTGTCCAGGTC GGACTACTGGACCCGATAACTATTGCTCCGTTCTCTACACTGTTTGTGTGCATTGCCAACATGACAATTCCAGCTTGTAAGTAA
AA sequence Show only first row Show all	>Lus10001952 pacid=23182276 polypeptide=Lus10001952 locus=Lus10001952.g ID=Lus10001952.BGIv1.0 annot-version=v1.0 METVLCSGNVVPARNLCSAVEAIILETAVAAAGSLLCSLLMVDLLSAIVFPLYLQFILASAYFTVPFDNPGSEDLDGDSSPFSGLQGVLNNAGSPAVAWV GEAGGAYNSTGRNLVTNAFVFSFWYLDQLARNGCCIIRHQNLQPAIISRRQLWPSRHNHLCPQPRLLYIGELTLQPCNFEISFSSTYSVFCLCPLLTSAL LWHHLMGRSVLPVSFSGTKQIRAYVHCSKTSQGITLLLINLDSNATVSIRVSNKDVVPSPTAVKHYQSRKKNFARMGRSGSKMDVDTVSETISQLEPVQV GLLDPITIAPFSTLFVCIANMTIPACK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001952 [exp]	0	1
					Lus10037800 [exp]	1.0	0.7665
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	8.1	0.7420
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	21.8	0.7610
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	25.8	0.7272
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	29.9	0.7384
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	34.3	0.7098
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	35.8	0.7235
AT3G45740			hydrolase family protein / HAD...		Lus10001969 [exp]	48.1	0.6509
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	55.2	0.7226
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	58.3	0.7029

Compare expression of checked genes

Lus10001952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.