Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31170 306 / 2e-102 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 235 / 9e-74 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT5G38830 229 / 4e-71 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT1G09620 47 / 2e-05 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001921 [exp] 363 / 3e-122 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10041428 [exp] 241 / 3e-75 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 239 / 2e-74 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 237 / 9e-74 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 236 / 3e-73 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10025653 [exp] 43 / 0.0003 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032321 [exp] 41 / 0.001 AT1G09620 648 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024300 [exp] 322 / 2e-106 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.010G122500 [exp] 265 / 9e-85 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.008G122901 [exp] 213 / 3e-68 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.003G003900 [exp] 44 / 0.0001 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G226700 [exp] 44 / 0.0002 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10001953 pacid=23182278 polypeptide=Lus10001953 locus=Lus10001953.g ID=Lus10001953.BGIv1.0 annot-version=v1.0 ATGAGCGGGTCACTGTTGACACAAGAAAGAAGAACTGCTGATTTTGCCTTGTGGAAGTCTGCAAAGGAGGGTGAACCGTCGTGGCAGAGTCCCTGGGGTC CTGGAAGACCGGGATGGCATATTGAGGGCAGTGCAATGAGTGCTGCCTACCTTGGTCACTCCTTTGACATACACGGTGGAGGAATGGATCTTGTGTTTCC TCACCATGAAAATGAGATTGCACAGAGTTGTGCTGCTTGTAGAGATAGTAATATTAGCTATTGGGTGCACAATGGATTTGTTACAATTGAGTCAGAGAAA ATGTCAAAATCTCTCGGAAACTTCTTCACCATCAGGCAGGTTATAGATCTATACCATCCGTTAGCAGTGAGATTTTTCCTGTTGGGGACCCACTACAGAT CTCCGATCAACTATGCCGATGCACTGCTTGAGAGTGCTTCCGACCGTCTCTTTTACATTTATCAGACATTATATGATTGCGAGGATGTTATCCGACAGCA CGATGCAGGCTCTGCAGATAGTGCAATCCCTCCCAATACAACGGACTGCATCGCTCTTGAGGAGTTAAAGGAAAGGGCACTGAAGCGTGCGAAGATAACA GAAGACGTGATCATGCAAAAGATTGAGGAAAGGACTGATGCAAGGAAGAACAAAGATTATGAGAAGTCGGATGTGATTAGGAAAGAATTAGCTGCTGTGG GAATTGCTCTTATGGATAGTCCCGAAGGGACTACTTGGAGACCGGCAATCCCGCTTGACTTACAAGAAGCAGAAAGTTGGCACAACTTGAATTTTTGTTG CAATGGACTAACGACGTTGGGTTGTACGATTGATACAGTTGATAGTTATGATATTTCATACACTAAAATCACTGGATCAACTCATCGAGCCTGCAATGGA GCCAGCCGACTCTCGAGCCTTGATCGAATTGGTGCTCGAGCCTCAAAAGAGCTGGCTCGCAAGCCTGCTGAGCCGAGTTAG
AA sequence Show only first row Show all	>Lus10001953 pacid=23182278 polypeptide=Lus10001953 locus=Lus10001953.g ID=Lus10001953.BGIv1.0 annot-version=v1.0 MSGSLLTQERRTADFALWKSAKEGEPSWQSPWGPGRPGWHIEGSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACRDSNISYWVHNGFVTIESEK MSKSLGNFFTIRQVIDLYHPLAVRFFLLGTHYRSPINYADALLESASDRLFYIYQTLYDCEDVIRQHDAGSADSAIPPNTTDCIALEELKERALKRAKIT EDVIMQKIEERTDARKNKDYEKSDVIRKELAAVGIALMDSPEGTTWRPAIPLDLQEAESWHNLNFCCNGLTTLGCTIDTVDSYDISYTKITGSTHRACNG ASRLSSLDRIGARASKELARKPAEPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	0	1
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	1.4	0.9024
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	3.7	0.8783
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	6.0	0.8155
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10024200 [exp]	6.7	0.8356
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	6.7	0.8592
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	6.7	0.8419
AT3G48210			unknown protein		Lus10042089 [exp]	8.2	0.8452
AT1G36320			unknown protein		Lus10033109 [exp]	8.8	0.8389
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	10.4	0.8204
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	10.8	0.8196

Compare expression of checked genes

Lus10001953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.