Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32120 437 / 2e-151 Galactosyltransferase family protein (.1) AT2G25300 405 / 6e-139 Galactosyltransferase family protein (.1) AT5G53340 229 / 2e-70 Galactosyltransferase family protein (.1.2) AT2G31170 230 / 4e-68 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT5G38830 166 / 4e-45 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT1G05170 160 / 7e-44 Galactosyltransferase family protein (.1.2) AT1G33430 159 / 2e-43 Galactosyltransferase family protein (.1.2) AT3G56300 159 / 9e-43 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT1G77810 157 / 9e-43 Galactosyltransferase family protein (.1.2) AT2G32430 154 / 2e-41 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001920 [exp] 521 / 0 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10001921 [exp] 297 / 3e-93 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10032350 [exp] 241 / 1e-74 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10014945 [exp] 240 / 2e-74 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 234 / 4e-72 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 213 / 4e-64 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10041428 [exp] 197 / 4e-56 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 197 / 4e-56 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 195 / 2e-55 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257200 [exp] 460 / 3e-160 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 434 / 3e-150 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.003G136000 [exp] 268 / 2e-85 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 244 / 3e-76 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.018G024300 [exp] 238 / 4e-71 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.010G122500 [exp] 186 / 5e-52 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.002G089800 [exp] 168 / 9e-47 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 161 / 2e-44 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 160 / 8e-44 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 160 / 2e-43 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10001954 pacid=23182258 polypeptide=Lus10001954 locus=Lus10001954.g ID=Lus10001954.BGIv1.0 annot-version=v1.0 ATGGACACCTTGCCGACGACGTCAAAATCTGACCGGCGATGGAGATCGAAGAATCTTCAGACTTCCAAGCCGTCTCTCGTGATGGCCTTCTTCTCTTGCC TCGCTTGGCTCTACGTTGCTGGAAGGTTGTGGCAAGATGCGGAGAACAGAATGTTGCTCACCAGTCTGCTTAAGACGAACTCTGCACAGAGGCCCAAGGT GCTTTCAGTGGATGATAAGCTAGCTGTTCTTGGATGCAAAGACCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACGATGGCCAAAAGTCAAGGA TATCTCAAGTACCAGTTGCCACAGTCCAAGTCAGCTTCTGGCCAAAAGCTTCTGGCAGTTATTGGAGTATACACTGGATTCGGTAGCCGACTCAGCAGGA ATGTCTTCCGAGGCTCTTGGATGCCAAGAGGTGACGATGCTTTAAAGAAACTGGAAGAAAGAGGAATAGTAATTAGATTCGTCATTGGTCGGAGTGCTAA TCGAGGTGATAGCTTAGATCGGAACATTGATGAGGAGAATAGCACGACAAAGGATTTCTTAATTCTTGAAGGTCACGAGGAGGCTGAGGAAGAGCTGCCC AAAAAAGCCAAGTTCTTCTACAGTACTGCAGTGCAGAACTGGGACGCAGAGTTTTACGTCAAAGTTGATGACCAAATCAACCTTGATCTCGATGGGTTAA TTGGACTCCTTGAACGTCGTCGTGATCAAGACAGCGCTTATATTGGATGCATGAAGTCGGGAGATGTGGTAACTGAAGAAGGAAAACAATGGTATGAGCC GGACTGGTGGAAATTTGGGGATGAGAAATCGTACTTCCGGCATGCAGCTGGCCCACTTATTATACTCTCAAAAAATTTGTCTCAGTACATTAACATTAAC AGCCCGACGAACAATGGGCACGCTGTTCAAGTTCCCCAGACCGGTCTTCTCCTCTATCCGATTCATCTCCACACTCTCCAGATCGCCGTTCCGATATGTT CACACCAGAACACGTCCTCCCCCACCAGCTCCGGTCATAGGAAAGAGAAGGCAATTGTTTCAGCTCTTCACTTCTCTCACCTCATCCCATCCGGTAACCA ACGGCAAGAGCTCCGGCGAAATCGCCGCGAGTCCTCAACCGGCCAACACGATGACAAGGAAGAAGGAGCTGTATCGAAATCGGAAGGAAATGTTGGAATG TACGTCTGCGGTGTTACGGCGTCCGATCTTAGCAATATCGGCCATGCTCGCGTTTACGTCACCTTCGATGTGCTCAACAGGTCATCAATGGCTGCCGCTG TGTGTTCACTATGTCTTAACTGGTATCTTAAGCATTTGGGATACGATGTCAGCTATGTTAGAAATTTCACAGATGTTAATGATAAGATAATCAAACGAGC AATTGAACTGGGAGAGGATCCGATCAGCTTAAGTAGACGATACTGTGAAGAATTCCACCATGATATAGTGTCACTGCAATGTCTTCCTCCTTCAGTCGAG CCACGTGTATCAGATCACATCCCTCACATCGTTGACATGATCAACAAGATTCTTGACAATGGATGTGCCTATAGAATTGACGGAGATGTCTATTTCTCTG TCGACAAGTTCCCAGAGTACGGCCAATTATCTGGAAGATAA
AA sequence Show only first row Show all	>Lus10001954 pacid=23182258 polypeptide=Lus10001954 locus=Lus10001954.g ID=Lus10001954.BGIv1.0 annot-version=v1.0 MDTLPTTSKSDRRWRSKNLQTSKPSLVMAFFSCLAWLYVAGRLWQDAENRMLLTSLLKTNSAQRPKVLSVDDKLAVLGCKDLERRIVEAEMELTMAKSQG YLKYQLPQSKSASGQKLLAVIGVYTGFGSRLSRNVFRGSWMPRGDDALKKLEERGIVIRFVIGRSANRGDSLDRNIDEENSTTKDFLILEGHEEAEEELP KKAKFFYSTAVQNWDAEFYVKVDDQINLDLDGLIGLLERRRDQDSAYIGCMKSGDVVTEEGKQWYEPDWWKFGDEKSYFRHAAGPLIILSKNLSQYININ SPTNNGHAVQVPQTGLLLYPIHLHTLQIAVPICSHQNTSSPTSSGHRKEKAIVSALHFSHLIPSGNQRQELRRNRRESSTGQHDDKEEGAVSKSEGNVGM YVCGVTASDLSNIGHARVYVTFDVLNRSSMAAAVCSLCLNWYLKHLGYDVSYVRNFTDVNDKIIKRAIELGEDPISLSRRYCEEFHHDIVSLQCLPPSVE PRVSDHIPHIVDMINKILDNGCAYRIDGDVYFSVDKFPEYGQLSGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	0	1
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	2.0	0.9282
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	2.4	0.9055
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	6.5	0.9062
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	7.7	0.8861
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	11.5	0.8973
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	11.8	0.9030
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	12.0	0.8756
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	12.1	0.8687
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	12.2	0.9009
AT2G27900			unknown protein		Lus10009613 [exp]	13.0	0.8939

Compare expression of checked genes

Lus10001954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.