Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25310 239 / 6e-81 Protein of unknown function (DUF2012) (.1) AT4G32130 236 / 1e-79 Protein of unknown function (DUF2012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001919 [exp] 343 / 8e-122 AT2G25310 263 / 3e-90 Protein of unknown function (DUF2012) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257100 [exp] 258 / 5e-88 AT2G25310 253 / 4e-86 Protein of unknown function (DUF2012) (.1) Potri.018G024600 [exp] 253 / 2e-86 AT2G25310 250 / 6e-85 Protein of unknown function (DUF2012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF09430 [flax] [poplar] DUF2012 Protein of unknown function (DUF2012)
Representative CDS sequence Show only first row Show all	>Lus10001955 pacid=23182269 polypeptide=Lus10001955 locus=Lus10001955.g ID=Lus10001955.BGIv1.0 annot-version=v1.0 ATGGCGTTGATAGCAAGAGTTAGGCCATCTGTTCTCCTACTTTTGCTGCAAATCTGCCTCTTGGTTCTCTCTCCAGCTCGCGCGATCTCGTCCGGGTCTG CTGATGGGTACACCATCAATGGCCGAATTAAAATTCCAGTAGCCAAAGGATATGGTATTCTTGGGAAAACATCGAATGTCAAAGTGATTCTGAACGGTGG CCAAAATGTTACCTTCTCAAGGCCTGATGGATACTTCTCATTCCATAATGTTCCAGCCGGAACACATTTGATTGAAGTGTCTGCAATGGGCTATTTCTTC TCTCCAGTCAGAGTTGATGTTAGTGCCAGGTTCCCAGGCAAGATTCAGGCAGCATTAACAGAGAACAGAAGAGGTCTGACTGAGCTGGTGTTGGAGCCAC TGAGGGAGGAACAGTACTACGAGATTAGAGAACCCTTCTCCCCGATGTCAATTGTCAAGAGCCCAATGGGGATGATGATCGGATTTATGGTGGTCGTCGT GTTCTTGATGCCCAAATTGATGGAGAACATGGATCCTGAAGAAATGAAGCGAGCACAAGAAGAAATGCCGTCTCTGGCGAAGTTCTTGCAACCAGCTGCT AGAAGCTAG
AA sequence Show only first row Show all	>Lus10001955 pacid=23182269 polypeptide=Lus10001955 locus=Lus10001955.g ID=Lus10001955.BGIv1.0 annot-version=v1.0 MALIARVRPSVLLLLLQICLLVLSPARAISSGSADGYTINGRIKIPVAKGYGILGKTSNVKVILNGGQNVTFSRPDGYFSFHNVPAGTHLIEVSAMGYFF SPVRVDVSARFPGKIQAALTENRRGLTELVLEPLREEQYYEIREPFSPMSIVKSPMGMMIGFMVVVVFLMPKLMENMDPEEMKRAQEEMPSLAKFLQPAA RS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	0	1
AT5G51510			unknown protein		Lus10027200 [exp]	1.4	0.9216
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	1.4	0.9163
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	1.7	0.9035
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	2.0	0.9018
AT5G12240			unknown protein		Lus10026824 [exp]	3.5	0.8970
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	5.2	0.8918
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	5.8	0.8801
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	6.9	0.8510
AT4G35980			unknown protein		Lus10041889 [exp]	7.3	0.8797
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	7.5	0.8854

Compare expression of checked genes

Lus10001955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.