Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008052 [exp] 130 / 9e-37 ND / Lus10038116 [exp] 127 / 1e-35 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256900 [exp] 142 / 1e-41 ND / Potri.018G123400 [exp] 135 / 6e-39 ND / Potri.006G063600 [exp] 130 / 6e-37 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001956 pacid=23182262 polypeptide=Lus10001956 locus=Lus10001956.g ID=Lus10001956.BGIv1.0 annot-version=v1.0 ATGGGGTCGGTTATCCGGGCGCTTGTATCTATGCGCACCAATTGTTCGATTGAAGTCCTGTCTGTGCTCGTCTCGCTAATCAGGACGCCGTTGATCGACG AGATGGAACTCGACGGGCAGCTCCCGAGAATCGTTGCTATCTTAGGTTCCCACGACGACGATCTGGTGATCAAGTCGGCGGTGGTCGACTGCGTTTGCGA GATTGCGTATCACGGGAGGAAAGAAGTGATCGAAGCGATGTTACAACTAGGAGTGATCAAGAAGCTTGTGGAGCTGCAGAGGTCGGGGCCGTTTGGAAGC TGCGTATCAAGGTTTGCGGTGCAGGTGGAGGTGGGTGATGGGTTGACTAGGGCGGAGAGGAAAGATCTGAAGAGAGAAATTGTAGGGAGAGTGAGGGATG CCTCAATTTCTGAAGCTGAAGCTGCTTCGATTTTGGCTGAGGTGCTCTGGGGTTGTACACCATGA
AA sequence Show only first row Show all	>Lus10001956 pacid=23182262 polypeptide=Lus10001956 locus=Lus10001956.g ID=Lus10001956.BGIv1.0 annot-version=v1.0 MGSVIRALVSMRTNCSIEVLSVLVSLIRTPLIDEMELDGQLPRIVAILGSHDDDLVIKSAVVDCVCEIAYHGRKEVIEAMLQLGVIKKLVELQRSGPFGS CVSRFAVQVEVGDGLTRAERKDLKREIVGRVRDASISEAEAASILAEVLWGCTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001956 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	2.0	0.8275
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	3.9	0.8443
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	9.7	0.8427
AT5G38250			Protein kinase family protein ...		Lus10038814 [exp]	9.8	0.7931
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	10.2	0.8254
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	12.4	0.8312
					Lus10010972 [exp]	14.0	0.8180
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	14.7	0.8156
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	16.5	0.8158
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	16.9	0.8120

Compare expression of checked genes

Lus10001956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.