Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001918 [exp] 166 / 8e-53 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256900 [exp] 87 / 7e-21 ND / Potri.006G063600 [exp] 67 / 2e-13 ND / Potri.018G123400 [exp] 66 / 4e-13 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001957 pacid=23182265 polypeptide=Lus10001957 locus=Lus10001957.g ID=Lus10001957.BGIv1.0 annot-version=v1.0 ATGGAAGACGAATCAGAGACCAAAACCAACACCCAACTCATTTCCTCGTTTCTCCACTCACTCAGAGGAGCTGCCAACGATCTGCACAAGAACAACAACC CCTTCTTCTCCTCCCTTTCCACCGCCCAACCCGCCATCGAAGCAATCTTGGAGCTCGAACACGAATTCGGCGCCTATCTCCTCTCTTCCGATCCTAATCT CTTCAAACTATCCCAATTGCTCAACGACCTCAAACCTCTTTACCGCAATCTCGAGAAATTAACCGGGATCAGTTCCCTCCTCCGCCGCCAAATCACCGCT TACAAAATCTACCAGCTCTCGTTCAAAATCGCCGCTGAAATCCAACTGTACTTCGATCGGCAGGAAGTGCAGAGGCTTGTGAGGACGCTTCAAGGAACCG ACGACGATGATCAAGTTAGGGTAATGGAAGTGCGGAACGCGGCGCTGGAGCCATCGTCGGGTTAG
AA sequence Show only first row Show all	>Lus10001957 pacid=23182265 polypeptide=Lus10001957 locus=Lus10001957.g ID=Lus10001957.BGIv1.0 annot-version=v1.0 MEDESETKTNTQLISSFLHSLRGAANDLHKNNNPFFSSLSTAQPAIEAILELEHEFGAYLLSSDPNLFKLSQLLNDLKPLYRNLEKLTGISSLLRRQITA YKIYQLSFKIAAEIQLYFDRQEVQRLVRTLQGTDDDDQVRVMEVRNAALEPSSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001957 [exp]	0	1
AT3G08780			unknown protein		Lus10022677 [exp]	13.0	0.7641
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	14.6	0.7494
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	17.9	0.7438
AT4G10810			unknown protein		Lus10023038 [exp]	27.5	0.7492
AT4G02425			unknown protein		Lus10030370 [exp]	30.2	0.7291
AT1G65720			unknown protein		Lus10020795 [exp]	32.7	0.6957
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	40.2	0.6914
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	43.8	0.7324
					Lus10010972 [exp]	45.3	0.7252
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	48.3	0.7018

Compare expression of checked genes

Lus10001957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.