Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25310 372 / 2e-127 Exostosin family protein (.1) AT5G03795 334 / 5e-112 Exostosin family protein (.1) AT3G07620 319 / 8e-107 Exostosin family protein (.1) AT3G42180 286 / 5e-94 Exostosin family protein (.1.3) AT5G11130 284 / 3e-93 Exostosin family protein (.1) AT5G33290 281 / 8e-92 XGD1 xylogalacturonan deficient 1 (.1) AT5G20260 278 / 4e-91 Exostosin family protein (.1) AT4G16745 273 / 2e-88 Exostosin family protein (.1.2) AT4G32790 263 / 7e-84 Exostosin family protein (.1) AT5G25820 256 / 3e-80 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001917 [exp] 572 / 0 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10039142 [exp] 359 / 1e-121 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 354 / 3e-119 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 348 / 2e-117 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 332 / 1e-113 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10025178 [exp] 332 / 1e-111 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10005186 [exp] 300 / 3e-99 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 287 / 2e-94 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 276 / 7e-89 AT5G20260 489 / 2e-169 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025400 [exp] 454 / 1e-159 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.006G118000 [exp] 345 / 1e-116 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 328 / 2e-110 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 324 / 3e-108 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G064600 [exp] 305 / 3e-101 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 297 / 2e-98 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 296 / 4e-98 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.018G025200 [exp] 293 / 5e-97 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 283 / 1e-92 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 280 / 1e-91 AT5G20260 545 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10001958 pacid=23182267 polypeptide=Lus10001958 locus=Lus10001958.g ID=Lus10001958.BGIv1.0 annot-version=v1.0 ATGGAGCACGGGTCGAGCGGCCGTAAGTTGAAGACGGAAGACCCATGGAGAGCCCACGCCTACTTCATGCCTTTCAGCGTAACGTGGATGGTCAAGTATC TCTACACCCCACTCTCTTACGATCTCGCCCCTCTCCGGCGCTTTGTGGCTGATTACGTTACAGTCATCTCCTCCAAATACCCCTTCTGGAACCGGACTCT CAGCGCCGACAATTTCATGCTTGCTAGCCACGATTGGGTCGGGTCCCATGCATCAAAAGGCAATCAACTAGTCCAAGACAAGTCAATCAGAGTCCTCTGC AACGCCAACACTTCCGAAGGATTTAACCCAAGAAAAGACGTCAGCCTACCCGAAATCCACCTCTACGGCGGAAACATACCCACCGAGCTCCTCCTCTCTC CTCAGCCCAAATCCCACCGCCGTCCTTACCTCGAATTCTTCGCCCGAGGCCTCCACGGTCCAATCCGCCCAATCCTCCTCAGCCACTGGCGAAACCGAAA CGACCCACAACTCAAAGTCTTCGAGTACCTACCCAAGAACGTAAGCTACTACTCCTTGATGTTAAAATCCAAGTTCTGCCTCTGCCCGAGCGGCCACGAG GTCGCCAGCCCGAGAATTGTGGAGGCCATCTACGCCGACTGCGTCCCCGTCATCCTGTCGGAGAACTACGTGCTTCCCTTTAGCGACGTGCTGAGGTGGC AGGTCTTCTCGGTGGAAGTTCACGTGGCAGAGATTCCGATGCTGAAAGAGATTCTGGGTTCGATACCGGAGGAGGAATATTCGAGGCTTAAGAAGGGGGT GCGTGCTGTGAGGAAGCATTTTGTGTTGAACCAGCCGGCGAAGAGGTTCGATGTTTTTCATATGATTCTGCACTCCGTTTGGCTGAGGAGACTCGATATC AAGCTCTAG
AA sequence Show only first row Show all	>Lus10001958 pacid=23182267 polypeptide=Lus10001958 locus=Lus10001958.g ID=Lus10001958.BGIv1.0 annot-version=v1.0 MEHGSSGRKLKTEDPWRAHAYFMPFSVTWMVKYLYTPLSYDLAPLRRFVADYVTVISSKYPFWNRTLSADNFMLASHDWVGSHASKGNQLVQDKSIRVLC NANTSEGFNPRKDVSLPEIHLYGGNIPTELLLSPQPKSHRRPYLEFFARGLHGPIRPILLSHWRNRNDPQLKVFEYLPKNVSYYSLMLKSKFCLCPSGHE VASPRIVEAIYADCVPVILSENYVLPFSDVLRWQVFSVEVHVAEIPMLKEILGSIPEEEYSRLKKGVRAVRKHFVLNQPAKRFDVFHMILHSVWLRRLDI KL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25310			Exostosin family protein (.1)		Lus10001958 [exp]	0	1

Compare expression of checked genes

Lus10001958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.