Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19580 476 / 3e-172 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2) AT1G47260 457 / 8e-165 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1) AT5G66510 408 / 2e-145 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2) AT5G63510 142 / 4e-41 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2) AT3G48680 141 / 1e-40 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1) AT1G47420 75 / 1e-15 SDH5 succinate dehydrogenase 5 (.1) AT2G17640 43 / 0.0001 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G35640 43 / 0.0001 ATSERAT3;2 serine acetyltransferase 3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024267 [exp] 555 / 0 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10028321 [exp] 495 / 7e-180 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2) Lus10041768 [exp] 489 / 4e-177 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2) Lus10031845 [exp] 144 / 1e-41 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031278 [exp] 144 / 1e-41 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031847 [exp] 66 / 2e-13 AT3G48680 179 / 7e-58 gamma carbonic anhydrase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229000 [exp] 503 / 0 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2) Potri.002G034100 [exp] 502 / 0 AT1G19580 497 / 2e-180 gamma carbonic anhydrase 1 (.1.2) Potri.005G120800 [exp] 491 / 3e-178 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2) Potri.015G098600 [exp] 141 / 9e-41 AT3G48680 374 / 2e-132 gamma carbonic anhydrase-like 2 (.1) Potri.012G100400 [exp] 138 / 9e-40 AT3G48680 389 / 3e-138 gamma carbonic anhydrase-like 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001959 pacid=23170266 polypeptide=Lus10001959 locus=Lus10001959.g ID=Lus10001959.BGIv1.0 annot-version=v1.0 ATGGGTACTCTCGGCAGGGCCGTATACACTATGGGATTCTGGATTCGGGAGACTGGCCAGGCGCTCGATCGTCTAGGTTGCCGCCTCCAAGGAAACCAGG GATTCAAAGAACAATTGTCTAGGCATCGAACCCTGATGAACTTGTTCGATAAAGTCCCCGCTGTTGATAAGGATGCATTCGTGGCCCCAAGTGCCTCTCT CATTGGTGACGTGCAAGTCGGGAGATCATCATCCATTTGGTATGGATGCGTTTTGAGAGGTGATGTGAACAACATTGTCATCGGGTCTGGAACTAATATA CAAGACAACTCACTTGTGCATGTTGCAAAGACTAATCTTGCTGGGAAAGTGCTACCAACTATCATTGGAGACAATGTCACTGTAGGTCATAGTGCTGTTT TACATGGATGCACTGTTGAGGATGAGGCATTTGTTGGTATGGGTGCAACACTTCTAGATGGTGTGGTTGTTGAGAAACATGCTATGGTTGCCGCCGGAGC CCTTGTAAGGCAGAATACAAGGATCCCTGCTGGAGAGGTATGGGGAGGGAATCCTGCAAAGTTTCTGCGCAAGCTGAGTGATGAGGAGATAGCCTTCATT GCAGAGTCAGCTGCGAATTATTCGAATCTTGCACAGGTTCATGCAGCTGAAAATGCAAAGCCTTTTGATGAGATTGAGTTTGAGAAGATGCTTCGTAAGA AGTTTGCACGTCGTGACGAGGAGTATGACTCAATGTTGGGTGTCGTCCGTGAAACTCCACCAGAACTTATTCTTCCAGACAACGTCTTGGCAGATAAAGC ACCAAAATGA
AA sequence Show only first row Show all	>Lus10001959 pacid=23170266 polypeptide=Lus10001959 locus=Lus10001959.g ID=Lus10001959.BGIv1.0 annot-version=v1.0 MGTLGRAVYTMGFWIRETGQALDRLGCRLQGNQGFKEQLSRHRTLMNLFDKVPAVDKDAFVAPSASLIGDVQVGRSSSIWYGCVLRGDVNNIVIGSGTNI QDNSLVHVAKTNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPAGEVWGGNPAKFLRKLSDEEIAFI AESAANYSNLAQVHAAENAKPFDEIEFEKMLRKKFARRDEEYDSMLGVVRETPPELILPDNVLADKAPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	0	1
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	1.0	0.8943
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	1.7	0.8735
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	4.9	0.8801
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	7.3	0.8061
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	7.3	0.8417
AT3G51010			unknown protein		Lus10028346 [exp]	8.7	0.7672
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	11.0	0.7784
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	13.3	0.8690
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	15.7	0.8432
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	17.0	0.8644

Compare expression of checked genes

Lus10001959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.