Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47271 202 / 3e-66 Cystathionine beta-synthase (CBS) family protein (.1) AT5G10860 191 / 1e-61 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT2G36500 50 / 3e-07 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT3G52950 49 / 1e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT5G63490 47 / 4e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 45 / 2e-05 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 45 / 2e-05 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019117 [exp] 196 / 3e-63 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 196 / 5e-60 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 186 / 3e-59 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 185 / 3e-59 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10030026 [exp] 117 / 3e-30 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035298 [exp] 111 / 4e-28 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035965 [exp] 45 / 3e-05 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10025698 [exp] 44 / 5e-05 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10043123 [exp] 44 / 6e-05 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228300 [exp] 248 / 7e-84 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 189 / 1e-60 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 187 / 4e-60 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.002G034800 [exp] 102 / 1e-27 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228200 [exp] 59 / 3e-10 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.005G070500 [exp] 52 / 1e-07 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 45 / 2e-05 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 42 / 0.0001 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10001964 pacid=23170270 polypeptide=Lus10001964 locus=Lus10001964.g ID=Lus10001964.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAAGGGCTTCAGAACATGACAGTGGCAGATGTTCTTATGACAAAAGGGGAAGAGAATGTTGGCTCATGGTTATGGTGCCACTACACCGATT CTGCAGCTGACGCAGTGAAGAATATGACACAGAACAATATAGGGTCACTGGTGGTTCTGAAGCCTGGCCAGCAACAGCATATTGCAGGAATCGTCACAGA AAGAGATTATCTTAGGAAAGTAATTGCACAAGGGAGATGTTCACAGTACACAAAAGTTGGGGAAATTATGACAGATGAGCAGAACAAGTTGGTAACTGTG ACATCTGACACGGACATTTTAAAGGCAATGCAGCTAATGACAGGCCACCACATTCGGCACGTTCCGGTTATCGATGCAAAGATAGTTGGGATGATTTCAA TAGTAGATGTTGTTCGAGCAGTTGTTGAGCAGCAAACTAGGGAGCTGAAGAGAAGCTCTCGCATAAACATCACAAAGGATTACTTGAATCTTCAAAGGAG GCGCCTCACCCAACTCTGCAATTTTCCTCGGCAGCTGTTCAACCTCATCAATCAGGCCTATCATACCAAACCAATCGATAAGAACAGTATAAGTAGCAAG CCCTGGCTCAAAACCTTCACTCTCGAGCTCCAACAAAAGGCTCAAGGCCTTGTCAAGTAA
AA sequence Show only first row Show all	>Lus10001964 pacid=23170270 polypeptide=Lus10001964 locus=Lus10001964.g ID=Lus10001964.BGIv1.0 annot-version=v1.0 MAEKGLQNMTVADVLMTKGEENVGSWLWCHYTDSAADAVKNMTQNNIGSLVVLKPGQQQHIAGIVTERDYLRKVIAQGRCSQYTKVGEIMTDEQNKLVTV TSDTDILKAMQLMTGHHIRHVPVIDAKIVGMISIVDVVRAVVEQQTRELKRSSRINITKDYLNLQRRRLTQLCNFPRQLFNLINQAYHTKPIDKNSISSK PWLKTFTLELQQKAQGLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	0	1
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	3.2	0.9618
AT5G05570			transducin family protein / WD...		Lus10027810 [exp]	3.5	0.9587
AT4G37445			unknown protein		Lus10001408 [exp]	3.6	0.9625
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	5.3	0.9341
AT4G22370			unknown protein		Lus10003793 [exp]	5.7	0.9537
AT2G20362			unknown protein		Lus10024963 [exp]	6.0	0.9526
AT4G16400			unknown protein		Lus10038791 [exp]	8.1	0.9532
AT1G76770			HSP20-like chaperones superfam...		Lus10018882 [exp]	8.4	0.9439
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	8.5	0.9411
AT1G05660			Pectin lyase-like superfamily ...		Lus10005304 [exp]	9.0	0.8565

Compare expression of checked genes

Lus10001964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.