Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 434 / 2e-147 FAD-binding Berberine family protein (.1) AT5G44410 423 / 2e-143 FAD-binding Berberine family protein (.1) AT4G20820 420 / 3e-142 FAD-binding Berberine family protein (.1) AT5G44400 419 / 1e-141 FAD-binding Berberine family protein (.1) AT5G44390 415 / 6e-140 FAD-binding Berberine family protein (.1) AT5G44380 410 / 4e-138 FAD-binding Berberine family protein (.1) AT1G30760 404 / 4e-136 FAD-binding Berberine family protein (.1) AT2G34790 404 / 9e-136 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30700 393 / 1e-131 FAD-binding Berberine family protein (.1) AT5G44360 390 / 3e-130 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026775 [exp] 725 / 0 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 671 / 0 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 527 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 506 / 8e-176 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 494 / 4e-171 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 467 / 2e-160 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 432 / 8e-147 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 427 / 4e-145 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 419 / 6e-142 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 561 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 538 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 537 / 0 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 533 / 0 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 533 / 0 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 531 / 0 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 530 / 0 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 530 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 530 / 0 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 528 / 0 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10001965 pacid=23173749 polypeptide=Lus10001965 locus=Lus10001965.g ID=Lus10001965.BGIv1.0 annot-version=v1.0 ATGTGGAAAATTCTGATCATCCTGCTGCTCGTCGTTAACCAGAACTCAGCTGATGATCAAATCATCCATGGAGATGATTCCGATTCAGTCCTCAGCTGCC TCCATTCCAGCAATCTCTCTCAGCTCATATATCTCCCCACAAACTCAACCTACACCTCCGTCCTTCAATCCTCCATCAAGATGAGCAGATTCAACACAAC CGCCACCGTCAAACCATCCATCATCGTCACTCCGAATTCCATCTCCCAAATCCAAGCCACAATCCGCTGCTCCAAAATCCACAATCTCCAAATCAGAATC CGAAGCGGCGGCCACGACTACGAAGGACTATCCTACACCTCTCAGGATCACAGCTCCTCTTCCTTCCTCCTCCTTGATCTCATCAGCTTCCGGAACATTA CAATTCATGGCGATTTGACTGCTTGGGTTCAGGCAGCTGTAACTACAGGGGAGCTTTACTATAGACTTAATGAGATGAGTCCGAATTTAGCTTTTCCTTC CGGGATTTGTCCGACAGTGGGGCTCGGCGGTCAGATCAGCGGCGGCGGGTGGGGGACTCTGCTCCGGAAGTACGGACTGGCCGCGGATAACGTGGTGGAC GCTCATTTAATCGACGCGAAAGGGAGGTTTCTCGACAGAGGTTCGATGGGGGAGGATCTGTTCTGGGCGATTAGAGGCGGCGGAGGGAACACATTCGGGA TCGTCGTCGCCTGGAAAATCAGACTGGTTAAGGTTCCGACTACCGTGACGGCCTGCACTGTTGTCAAAACTTTAGAGCAGAACGCGACGGAGATTTTTCA CTGGTGGCAGTACGTCGTTGATAAGCAGCTCCCCGACGACGTTTTTTCCATGGCTGTTCTAACCAGCGGTCAAGTTTCCTTCAATACACTGTTTCTGGGA AAAACAGAGTCGTTGATTCCGATAATGGACAGCAAATTTCCAGGACTGGGTCTGAGACGAGAGAACTGCACAGAAATGAGCTGGGCGAGATCAATTCTCT ACTTGGGCGGATTCCCACCGGAGATCCCACTCGAGAGCTTACTCGACAGAACGATCTCAGCGACAGGGTCGGCAAAATTCAAAGGAAAATCTGACTACGT GAAAGACCCGATTCCGATGAGCGGGTTGAAAGGGATATGGGAGAAGCTCAAAGAAGTTGATGCTCAAACGGGCGGGTTGATAATGGCGTCTTACGGAGGG AAGATGAAGGAGATTTCTGAATCGAGCATTCCATTTCCACACAGAGATGGGATTATCTACCAAGTGGAGGAAGTGACGTTTTGGGTTGAAGACGGTGAAG AGGCTGCTGATAGGCAAATCAATTGGCTGAGAGGGTTGTATGATTACATGGCCCCTTATGTCTCGAAGAATCCTCGAGAAGCTTATGTGAATTATAGGGA TTTGGATATTGGGACTAACGGCGACGACAGCAGCTGGAGTTACCGGAGGACGAGGAATTGGGGTTTGAAGTATTTTAAGGGTAACTTTGATCGATTGATG AGGGTGAAGACTGCGGTGGATCCAAATAATTTGTTTAGGAGTGAGCAGAGCATCCCGTCTCTGATTGGTAGTGGCTGA
AA sequence Show only first row Show all	>Lus10001965 pacid=23173749 polypeptide=Lus10001965 locus=Lus10001965.g ID=Lus10001965.BGIv1.0 annot-version=v1.0 MWKILIILLLVVNQNSADDQIIHGDDSDSVLSCLHSSNLSQLIYLPTNSTYTSVLQSSIKMSRFNTTATVKPSIIVTPNSISQIQATIRCSKIHNLQIRI RSGGHDYEGLSYTSQDHSSSSFLLLDLISFRNITIHGDLTAWVQAAVTTGELYYRLNEMSPNLAFPSGICPTVGLGGQISGGGWGTLLRKYGLAADNVVD AHLIDAKGRFLDRGSMGEDLFWAIRGGGGNTFGIVVAWKIRLVKVPTTVTACTVVKTLEQNATEIFHWWQYVVDKQLPDDVFSMAVLTSGQVSFNTLFLG KTESLIPIMDSKFPGLGLRRENCTEMSWARSILYLGGFPPEIPLESLLDRTISATGSAKFKGKSDYVKDPIPMSGLKGIWEKLKEVDAQTGGLIMASYGG KMKEISESSIPFPHRDGIIYQVEEVTFWVEDGEEAADRQINWLRGLYDYMAPYVSKNPREAYVNYRDLDIGTNGDDSSWSYRRTRNWGLKYFKGNFDRLM RVKTAVDPNNLFRSEQSIPSLIGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	0	1
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	2.0	0.9576
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	3.5	0.9526
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	4.0	0.9542
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	4.9	0.9520
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	6.0	0.9351
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	6.0	0.9466
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	6.1	0.9347
AT3G19615			unknown protein		Lus10042265 [exp]	6.2	0.9462
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	7.3	0.9293
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	9.5	0.9320

Compare expression of checked genes

Lus10001965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.