Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21530 148 / 3e-44 FHA SMAD/FHA domain-containing protein (.1) AT4G14490 46 / 1e-05 FHA SMAD/FHA domain-containing protein (.1) AT5G67030 44 / 5e-05 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008411 [exp] 292 / 1e-100 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1) Lus10019342 [exp] 43 / 0.0002 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10018056 [exp] 41 / 0.0004 AT3G02400 155 / 1e-43 SMAD/FHA domain-containing protein (.1) Lus10031083 [exp] 41 / 0.0006 AT4G14490 159 / 1e-45 SMAD/FHA domain-containing protein (.1) Lus10042052 [exp] 40 / 0.0007 AT3G02400 126 / 3e-33 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 40 / 0.001 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156900 [exp] 181 / 7e-57 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1) Potri.009G156700 [exp] 159 / 5e-49 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1) Potri.005G138400 [exp] 45 / 3e-05 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.004G111500 [exp] 44 / 7e-05 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.007G044300 [exp] 42 / 0.0003 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10001966 pacid=23173754 polypeptide=Lus10001966 locus=Lus10001966.g ID=Lus10001966.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTATAGGAACCCACCAGTGTTTCCATTACCGCAACTACTCAACAAAAAAGCCATCATCATCATCATCATCAACAAATGTTGTTGCTTCTT CATTATCAATCCTCCCATTCAAACTTTGCAGCAGCTTCTTCAGTCAAGGCCTTAGTATAAACCAAAGTAAAAAGCTGCGTACTGGGTATAATCAAGTAGT TCAAGCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGGAAGCACAACCACAACTGCTGCTGCTACTGTTCAAGATCGATGGATTCTTGCTCCTGTGGGAGAT GGAGATTGGAGGCACATAGGGTTTCAGGTTAAGATGCCTGGTGCGTTTGAAATCGCTTCTAATGAGGTGACAGTGGGACGAGTTCCAGAGAAAGCTGACA TGGTGATTCCAGTTGCTACAGTGTCGGGAGTGCATGCCAAGATCCAGAAGAAGGGAGGCAACCTGGTGGTAACCGATTTGGACAGTACAAACGGCACCTT CATTGGCAAAAGTCGCCTCAAACCCGGTCTTCCTTACACCCTCGCTTCCGGCAACTTTGTCATCTTCGGGGACGTTCACCTGGCAATGTTTAGAGTATCG AAACTGGAGAATGTGGAAATTGCGGCCACGTCCAGTAGTGATTCTTCTTCTTCTTCATCTTCTGTAGAAGAAGAAGAAACAGAAGAGATTGAGACCTCTG TGGAAGTGGAAGCTAGTAGCAGTTAG
AA sequence Show only first row Show all	>Lus10001966 pacid=23173754 polypeptide=Lus10001966 locus=Lus10001966.g ID=Lus10001966.BGIv1.0 annot-version=v1.0 MEAAIGTHQCFHYRNYSTKKPSSSSSSTNVVASSLSILPFKLCSSFFSQGLSINQSKKLRTGYNQVVQASSSSSSSSAGSTTTTAAATVQDRWILAPVGD GDWRHIGFQVKMPGAFEIASNEVTVGRVPEKADMVIPVATVSGVHAKIQKKGGNLVVTDLDSTNGTFIGKSRLKPGLPYTLASGNFVIFGDVHLAMFRVS KLENVEIAATSSSDSSSSSSSVEEEETEEIETSVEVEASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	0	1
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	1.0	0.9697
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	1.4	0.9528
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	3.7	0.9415
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	4.6	0.9486
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	5.0	0.9461
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	5.7	0.9483
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	6.0	0.9386
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	6.3	0.9174
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	7.3	0.9440
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	7.7	0.9355

Compare expression of checked genes

Lus10001966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.