Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52200 709 / 0 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 311 / 1e-98 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 310 / 4e-98 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G34430 145 / 2e-37 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G06850 144 / 5e-37 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT4G26910 122 / 3e-30 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 122 / 2e-29 Dihydrolipoamide succinyltransferase (.1) AT3G25860 119 / 2e-28 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008412 [exp] 1091 / 0 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10006877 [exp] 323 / 6e-104 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 319 / 1e-100 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10041467 [exp] 149 / 5e-39 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10034304 [exp] 147 / 3e-38 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006498 [exp] 131 / 6e-32 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10037492 [exp] 129 / 1e-31 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10043117 [exp] 127 / 3e-31 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043116 [exp] 127 / 3e-31 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027400 [exp] 838 / 0 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.003G043900 [exp] 315 / 8e-100 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 306 / 9e-97 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.013G114300 [exp] 159 / 2e-42 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 150 / 4e-39 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 139 / 2e-35 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G011300 [exp] 131 / 1e-32 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.011G089200 [exp] 127 / 2e-31 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.014G154700 [exp] 126 / 6e-31 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.001G357000 [exp] 126 / 8e-31 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0149 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10001967 pacid=23173753 polypeptide=Lus10001967 locus=Lus10001967.g ID=Lus10001967.BGIv1.0 annot-version=v1.0 ATGACGCTTTCACGGCTCAGACATCCGGCGATCTCACGGGCCTCTTCTTTATTCAGAGCTCGATTTATCTCCTACTACGCTGACTCCTCCACTAGAACCC TTTCTCGGCCTTCTTTATTATTCAGCATCAAGGTCACATATGATAGTCCCTTGAACATAAAGTTGCACAGCAGTGTACGGCATTTCTCTTCGGAGGTTCC ACCACACACGGTTGTGGGGATGCCAGCTTTGTCCCCTACAATGACTCAAGGTAACATTGAAAAATGGAACAAGAAGGAAGGAGACAAGATAGAAGTTGGT GATGTACTTTGTGAAATAGAGACAGATAAGGCCACTCTTGAATTTGAATGCCTTGAAGAGGGATATTTGGCTAAGATATTGGCACCCGAAGGTTCAAAAG ACATACTTGTAGGACAGGCCATTGCTATAACTGTTGAGGGTGCAGATGATATCGGTAAAGTCCCTGTGAGTGGCTCAGAGGCTAAAGAGGAAAAAATAAA AACCGGTCTAGATGTCAAAACTGAAGACAGTGTACATGAGAAGAGTTCTGTTCAGTTGAATACTTCAGAACTCCCACCCCATATTGTTCTTGGAATGCCA GCACTATCTCCCACAATGAATCAAGGCAACATTTTCAAGTGGAAGAAAGAGGAAGGTGACAAGATAGAAGTTGGTGACATAATATGTGAGATAGAGACAG ACAAAGCTACTCTTGAGTTTGAAAGTCTAGAAGAAGGGTATTTGGCTAAGATAGTGGCTCCAGATGGTTCGAAAGATGTTGCTGTTGGAGAACCTATTGC AATAACAGTCGAAGATCCAGGCGATATTGAAATCATGAAGAATTCTGCTACTATTGGGTCAGAGGTCAAAGAAGAAAAATCACTGCCTGCTGCTACTAAA CAAGAAACGCAGGGAGCTCATGCTAGTGTTAGAAGGATTAGTCCGTCTGCTAAGATGCTAATTTCACAGAATGGATTGGATGTATCATCTTTGAACCCTT CGGGTTTCGATGGTACTCTACTTAAGACGGATGTTATAGAAGCTATAAGGTCAGGAAAGGGATCTAAAAGCAAACCAGAAACAAAAAAGAAAGTTGCTCC GTCACCTCAGAAAAGCCAGCAACCTTCTTCCGCCACCCCACCACTGGATTCAGATTCTTTTGAAGACATACCTAACTCTCAGATACGCAAGGTTATAGCT AAGAGGCTGTTGGAATCAAAGCAGGGTACCCCACATTTATACCTGTCGACAGATGTCATTTTGGATCCTCTACTCGCTTTCAGAAAGGAGTTTAAAGACA ATCATGATATTAAAGTTTCGGTCAATGACATTGTCATCAAAGCTGTTGCAGTTGCTCTAAAAAACGTACCAGAATCCAATGCATATTGGAATGACGAGAA AGGTGAAATCATTCCCTGTGATTCTGTCGACATCTCGATTGCAGTAGCCACTGACAAGGGATTGATGACACCTATAATTAAAAATGCTGATCAGAAATCT ATCTTAGCCATCTCTTTGGAGGTCAAGCAACTCGCCGAAAAAGCCCGAACTGGGAAGCTTGGTCCACATGAGTTTCAAGGAGGGACGTTCAGCATTTCAA ACCTCGGTATGTATCCGGTCGATCAGTTCTCTGCAATAATCAACCCCCCACAGGCGGGCATACTAGCGGTAGGCCGAGGAAACAAAGTAGTTGAGCCAGT GGTTGGAAGTGATGGAACTTTGGTTGCTGCGGTTGTGAACAAAATGATCTTGACTTTATCTGCGGATCATCGTGTTTTCGATGGCAAAGTTGGAGGTTCA TTCCTCTCAGCTCTGAGGTCAAACTTCAGTGACATCAGAAGACTACTACTCTAA
AA sequence Show only first row Show all	>Lus10001967 pacid=23173753 polypeptide=Lus10001967 locus=Lus10001967.g ID=Lus10001967.BGIv1.0 annot-version=v1.0 MTLSRLRHPAISRASSLFRARFISYYADSSTRTLSRPSLLFSIKVTYDSPLNIKLHSSVRHFSSEVPPHTVVGMPALSPTMTQGNIEKWNKKEGDKIEVG DVLCEIETDKATLEFECLEEGYLAKILAPEGSKDILVGQAIAITVEGADDIGKVPVSGSEAKEEKIKTGLDVKTEDSVHEKSSVQLNTSELPPHIVLGMP ALSPTMNQGNIFKWKKEEGDKIEVGDIICEIETDKATLEFESLEEGYLAKIVAPDGSKDVAVGEPIAITVEDPGDIEIMKNSATIGSEVKEEKSLPAATK QETQGAHASVRRISPSAKMLISQNGLDVSSLNPSGFDGTLLKTDVIEAIRSGKGSKSKPETKKKVAPSPQKSQQPSSATPPLDSDSFEDIPNSQIRKVIA KRLLESKQGTPHLYLSTDVILDPLLAFRKEFKDNHDIKVSVNDIVIKAVAVALKNVPESNAYWNDEKGEIIPCDSVDISIAVATDKGLMTPIIKNADQKS ILAISLEVKQLAEKARTGKLGPHEFQGGTFSISNLGMYPVDQFSAIINPPQAGILAVGRGNKVVEPVVGSDGTLVAAVVNKMILTLSADHRVFDGKVGGS FLSALRSNFSDIRRLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	2.2	0.8075
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	2.4	0.7871
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	5.0	0.7729
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	6.5	0.7712
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	7.0	0.7598
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	12.2	0.7248
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	12.8	0.7771
AT5G40740			unknown protein		Lus10014617 [exp]	14.4	0.7467
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	14.9	0.8016
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	15.4	0.7231

Compare expression of checked genes

Lus10001967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.