Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45740 263 / 1e-85 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008416 [exp] 403 / 1e-139 AT3G45740 481 / 2e-169 hydrolase family protein / HAD-superfamily protein (.1) Lus10023480 [exp] 202 / 1e-61 AT3G45740 448 / 2e-157 hydrolase family protein / HAD-superfamily protein (.1) Lus10040363 [exp] 77 / 5e-17 AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045700 [exp] 246 / 3e-78 AT3G45740 488 / 3e-172 hydrolase family protein / HAD-superfamily protein (.1) Potri.010G216000 [exp] 218 / 5e-68 AT3G45740 466 / 1e-164 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001969 pacid=23173750 polypeptide=Lus10001969 locus=Lus10001969.g ID=Lus10001969.BGIv1.0 annot-version=v1.0 ATGCGGTTTCAGTACCAAACCCTCGCTAATGCAATACGGAGGAGGAGCAGTAACTTTCCGCCGTTGCCGTCGCCGCCGCTTTTCTGTTCGCGGTCCTTCT CTTCTCCTTCCTTCCAAGAGCACAGTCCACTTCCACGTTTCGGCATTGCGTTCGATATCGACGGCGTCCTTCTCCGAAGCGAAGTTCCAATCGGCGGCTC TCTCCAAGCTCTCAAACGCCTCTACAACTCCTCCGGTCTCTTACGGATCCCTTACGTTTTCTTGACAAATGGTGGTGGCTTTCGAGAATCCGCGAGAGCA GTGGAGTTGAGCAGAATCTTAGGTGTCAACGTTTCTCCTTTGCAGGTTCTACAAAGTCATATTCCATTTAAGAATTTGGTACAGAGGTTTAAGAGCGATC TTGTGGTTGCAGTTGGAAAAGGCGTGCCAGCTGCAGTGATGTCCGAATACGGATTTAAAAATGTGAAGTCGGAAATCGAACAGGTTGCAAAAAGTAGTGA CATTTCAGACGATACAGCTTCAACCAACACTATCTGTTCACGACCAGTACAGGCGGTGTTTGTACTCAGCGATCCTGTTGATTGGAGCAGAGACATTCAG GTTCTTTGTGACATCTTGAGAACGGGAGGTCTTCCTGGAAGGATGATTGGAGACCAGCCGCAACTTTATTTTGCCCATGATGACCTTGTATACCAGTTAT GTACCATCTATTCCAATGTTCAAGTGACTAATATGGTCGTCTCCGGCGAGGAGGTGACGATGCAGGGGACGGAGCTTTCAGAAGGCTGCTTTTCCTTCAG AACGTTTCGGTTTAGGAGTTTTCAGAATCGCGTTAGAATCCATCTTCAACAGGCTGGACGTCCTTGGTTCTCAATCTTGACAAGTACTGGAGTCTTCAAA AGAACTGGAAACCATGACAAGTTTGCAGCAGATCTGGTTGTTGACACCGTGGAAGAGGCAGTGGACTACATTATACGAAAGGAGTGTAGCTGA
AA sequence Show only first row Show all	>Lus10001969 pacid=23173750 polypeptide=Lus10001969 locus=Lus10001969.g ID=Lus10001969.BGIv1.0 annot-version=v1.0 MRFQYQTLANAIRRRSSNFPPLPSPPLFCSRSFSSPSFQEHSPLPRFGIAFDIDGVLLRSEVPIGGSLQALKRLYNSSGLLRIPYVFLTNGGGFRESARA VELSRILGVNVSPLQVLQSHIPFKNLVQRFKSDLVVAVGKGVPAAVMSEYGFKNVKSEIEQVAKSSDISDDTASTNTICSRPVQAVFVLSDPVDWSRDIQ VLCDILRTGGLPGRMIGDQPQLYFAHDDLVYQLCTIYSNVQVTNMVVSGEEVTMQGTELSEGCFSFRTFRFRSFQNRVRIHLQQAGRPWFSILTSTGVFK RTGNHDKFAADLVVDTVEEAVDYIIRKECS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45740			hydrolase family protein / HAD...		Lus10001969 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10020184 [exp]	14.4	0.6072
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	17.1	0.7326
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	21.4	0.6835
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	28.8	0.7060
AT5G27430			Signal peptidase subunit (.1)		Lus10001092 [exp]	32.9	0.6589
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	42.5	0.6044
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	44.9	0.6660
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	46.4	0.6366
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001952 [exp]	48.1	0.6509
					Lus10004903 [exp]	54.1	0.6379

Compare expression of checked genes

Lus10001969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.