Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05830 511 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) AT3G07300 59 / 1e-09 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 56 / 2e-08 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 54 / 1e-07 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 53 / 2e-07 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 53 / 2e-07 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 51 / 8e-07 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008417 [exp] 671 / 0 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10002762 [exp] 58 / 6e-09 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 57 / 6e-09 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 57 / 1e-08 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10016349 [exp] 56 / 3e-08 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10027234 [exp] 44 / 0.0002 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10038944 [exp] 43 / 0.0004 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219900 [exp] 563 / 0 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Potri.001G163300 [exp] 60 / 1e-09 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.001G026100 [exp] 60 / 1e-09 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 59 / 2e-09 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 59 / 2e-09 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G072100 [exp] 56 / 2e-08 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.017G111800 [exp] 53 / 2e-07 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G068600 [exp] 51 / 6e-07 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 46 / 3e-05 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10001970 pacid=23173751 polypeptide=Lus10001970 locus=Lus10001970.g ID=Lus10001970.BGIv1.0 annot-version=v1.0 ATGCCTCCGAATTCATCAGCCGCCGCCTCCGCCGCCGCCGATGACAGCACTCTTCAGTCCATTTGCTACACCCGCGGCTCTCTTCAGCTCCTTGACCAGA GGAAGCTCCCCCTGGAGACCATTTACTTGGAGATCAAAGATTCTTCTGATGGATGGTTGGCGATACGAGATATGGTGGTCCGTGGGGCACCTGCTATTGC CATTGCAGCCGCTCTCTCCCTTGCGGTTGAGGTGTCTAACCTAGGGAGTTTCACTGGTACACCAGTAGAAGCTGCGTCGTTCCTTTCTGCTAAATTGGAA TATCTCGTTTCAAGCCGCCCAACTGCTGTGAATCTATCTGATGCTGCAACGAAGCTGAAAGATGTGATAGGGAAGGCTACTGCTGGAGCATCTGAAGCTA GCAATGTTTTTCAGGCTTATGTTGAAGCGGCTGAAGTCATGCTTGAAGAAGATGTTGCTTCGAACAAAGCAATCGGGTCATATGGAGCACAATTCATTCA GAACCACTTGAATGGCCATACGAGCTTTTCTGTTCTGACTCACTGCAATACTGGCAGTCTTGCAACAGCTGGATATGGGACTGCTCTGGGTGTCATCCGT GCACTTCATTCAGGAGAAGTGTTGGAAAGAGCTTATTGTACTGAAACTCGTCCATTTAATCAAGGTTCTAGGCTCACAGCTTTTGAGCTGGTGCATGAGA AAATACCTGCTACTCTAGTAGCAGACTCTGCTGCTGCAGCATTGATGAAAGAAGGTCGAGTGAGCGTCGTTATTGTTGGAGCAGATCGAGTTGCTGCCAA TGGTGACACTGCGAACAAGATCGGGACCTACAGCCTAGCACTCTGTGCTATGCATCACAAAATCCCATTTTACGTCGCGGCACCCATTACATCAGTCGAT CTGTCTCTTAGTTCCGGGAAGCAAATAGTTATAGAGGAAAGATCTCCTAAGGAGCTGCTGAACTCTCGCGGAGGACTTGGCGAACAGGTTGCTGCATCTG GGATTTCCGTTTGGAACCCTGCTTTCGATGTCACCCCTGCAGACTTGATAACCGGCATCATAACTGAGAAGGGTGTTATCACGAAGGTAGATGGTGATAA GTTCGACATAAAAGCTTTCGTGGCAAGCAAAGCATCCTAG
AA sequence Show only first row Show all	>Lus10001970 pacid=23173751 polypeptide=Lus10001970 locus=Lus10001970.g ID=Lus10001970.BGIv1.0 annot-version=v1.0 MPPNSSAAASAAADDSTLQSICYTRGSLQLLDQRKLPLETIYLEIKDSSDGWLAIRDMVVRGAPAIAIAAALSLAVEVSNLGSFTGTPVEAASFLSAKLE YLVSSRPTAVNLSDAATKLKDVIGKATAGASEASNVFQAYVEAAEVMLEEDVASNKAIGSYGAQFIQNHLNGHTSFSVLTHCNTGSLATAGYGTALGVIR ALHSGEVLERAYCTETRPFNQGSRLTAFELVHEKIPATLVADSAAAALMKEGRVSVVIVGADRVAANGDTANKIGTYSLALCAMHHKIPFYVAAPITSVD LSLSSGKQIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPADLITGIITEKGVITKVDGDKFDIKAFVASKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	1.0	0.9065
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	2.0	0.8629
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	4.0	0.8290
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	4.5	0.8493
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	4.5	0.8358
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	5.9	0.8325
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	7.1	0.8250
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	7.7	0.8175
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	7.9	0.8525
					Lus10031757 [exp]	9.7	0.7994

Compare expression of checked genes

Lus10001970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.