Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13580 401 / 7e-137 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G37360 382 / 4e-129 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55090 381 / 9e-129 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 374 / 5e-126 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G53510 365 / 1e-122 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55110 335 / 4e-111 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 333 / 4e-111 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 314 / 5e-103 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G13610 140 / 6e-38 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT5G52860 129 / 3e-34 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030306 [exp] 470 / 8e-169 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 438 / 2e-150 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 345 / 1e-114 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10040341 [exp] 220 / 1e-67 AT2G39350 452 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10040342 [exp] 187 / 7e-61 AT2G39350 183 / 2e-55 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 145 / 1e-39 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 145 / 2e-39 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 134 / 4e-37 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 135 / 3e-36 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213400 [exp] 397 / 1e-134 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 391 / 1e-132 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 390 / 4e-132 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 375 / 3e-126 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 364 / 2e-122 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 152 / 7e-42 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.013G117700 [exp] 144 / 1e-39 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 143 / 6e-39 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 139 / 8e-38 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 138 / 3e-37 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10001972 pacid=23140502 polypeptide=Lus10001972 locus=Lus10001972.g ID=Lus10001972.BGIv1.0 annot-version=v1.0 ATGTCCACAACGTTCTACACCTGCGCCGACGCGCTCCCGGTTTTCCTCCAGGAGCGTTACATCTACTTGCGGGAAACGGCCCACAACGCTTATCGAAGAT CCTCGTACGTCCTCTCACACGCGCTGGTCTCACTGCCGGCATTAGTCTTCCTCTCGATAACCTTCGCAGCGACGACATTTTGGGCGGTCGGGTTAGACGG CGGGTTCTCGGGTTTCCTATTTTACTTCCTCATAATCCTGGCCGCGTTCTGGGCGGGGAACTCATTCGTGACGTTCCTATCCGGAGTCGTACCGCACGTG ATGTTAGGGTACACGATCGTGGTGGCGATCCTGGCGTATTTCTTGCTCTTCAGCGGGTTTTTCATAACCCGGGATAGGATACCGGATTACTGGATATGGT TCCACTACATGTCACTAGTGAAGTATCCGTACGAGGCCGTTTTGCTTAACGAGTTCCAGGATCCGAGCAAGTGCTTCGTGAGAGGGGTGCAGATATTCGA CAACACGCCGTTAGTCGGGCTGCCGAGGGCAGTGAAGCTGAGGATGTTGAGGAATGTGAGCGGGTCGATGGGGGTGAACATAACGGCGTCAACTTGTTTG ACGACGGGAGGGGATATACTGAACCAGCAAGGGATTACGGATTTGAGCAAATGGAGTTGTTTGGTGGTTACGGTGGCTTGGGGGTTCTTCTTCAGGACTT TGTTTTACTTTGCTTTGTTAAAGGGCAGTAAGAACAAGAGGAGGTAA
AA sequence Show only first row Show all	>Lus10001972 pacid=23140502 polypeptide=Lus10001972 locus=Lus10001972.g ID=Lus10001972.BGIv1.0 annot-version=v1.0 MSTTFYTCADALPVFLQERYIYLRETAHNAYRRSSYVLSHALVSLPALVFLSITFAATTFWAVGLDGGFSGFLFYFLIILAAFWAGNSFVTFLSGVVPHV MLGYTIVVAILAYFLLFSGFFITRDRIPDYWIWFHYMSLVKYPYEAVLLNEFQDPSKCFVRGVQIFDNTPLVGLPRAVKLRMLRNVSGSMGVNITASTCL TTGGDILNQQGITDLSKWSCLVVTVAWGFFFRTLFYFALLKGSKNKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	0	1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	1.0	0.9794
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	1.4	0.9732
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	1.7	0.9718
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	2.8	0.9711
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	3.5	0.9655
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	3.9	0.9698
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	4.2	0.9636
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	5.5	0.9604
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	6.3	0.9639
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	6.9	0.9441

Compare expression of checked genes

Lus10001972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.