Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39340 898 / 0 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G55070 639 / 0 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT4G37880 107 / 2e-24 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 94 / 4e-20 zinc ion binding (.1.2) AT5G09630 91 / 5e-19 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G06290 57 / 1e-07 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030305 [exp] 2621 / 0 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10020487 [exp] 110 / 3e-25 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 100 / 5e-22 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 92 / 3e-19 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 89 / 2e-18 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10019837 [exp] 69 / 8e-12 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10012769 [exp] 62 / 4e-09 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10034008 [exp] 62 / 6e-09 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10007106 [exp] 50 / 8e-06 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047700 [exp] 1136 / 0 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 1127 / 0 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.008G047300 [exp] 703 / 0 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.015G128600 [exp] 120 / 1e-28 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 117 / 1e-27 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 112 / 3e-26 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 111 / 1e-25 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.010G028200 [exp] 58 / 6e-08 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.001G035700 [exp] 44 / 0.001 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.010G213950 [exp] 0 / 1 AT3G55070 0 / 1 LisH/CRA/RING-U-box domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10001973 pacid=23140520 polypeptide=Lus10001973 locus=Lus10001973.g ID=Lus10001973.BGIv1.0 annot-version=v1.0 ATGGAGATCGATCCAATCCCCAACGGCAACTCCGCCGTCAATTCTGTTTCAACCACCGCGTCCCCCATGGTCACCGCACCATCGTCCAACTTGACTCGAT TGACAGAATCATTGAAGCTCGAGCACCAGTTCGTCCGCGTGCCTTTCGAGCACTACAAGAAGACGATCCGCGTCAACCACCGTGCCGTCGAGAAGGAAAT TTCTTCCGTGGTTTCAGGCGTTAATGAAGCTGCTGATTCCGATTTGTCCAAGGACGACGCTGTTCAGCACCTTACTTCCCTCGTCTCCAGATTGCAAGGT CTCAAAAGAAAGCTGGAAGAGGGCAGTCGCTCTGAGAACCTGCAAGCACAAAGATGTCGTGCTCGTCTTAACCATTTGGAATCAGCAGATGCAGACAATC TGACAGAATGGAGCAACACTCGTCTCAAACGAATTCTCGTCGACTACATGCTGCGAATGTCTTACTACGACACTGCAATGAAGCTTGCTGAAAGCAGCAA CATTCAGCTGCCTGATAGACTTGTTGATACATCTACCGTCCTTTCTCTCTTATCATTTGAGCAAACGTTATCCCAGGATCTGGTTGATATTGATGTATTC CAAGAAGCCAGAAGGGTGATCGATGCTCTTCAGAATAAAGAAGTGGCTCCTGCTCTGGCCTGGTGTGCTGATAATAGATCGCGTTTGAAGAAGTCGAAGA GCAAATACGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTGGTGCGGGCTGACAATCATATGCGTGCCATAGCATATGCTCGGAAGTATCTTTCTCC ATGGGGAGCTACCCACATGAAAGAATTGCAGAGGGTCATGGCCACTCTGGCTTTCAAAAGTGCTACTGAATGTGCAACATATAAGGTTCTGTTTGAACCA AAGCAATGGGACTATCTGGTGGGACAGTTTAAACAGGAGTTCTTCAAATTATATGGCATGACTCTTGAGCCACTGCTGAATATTTATCTACAGGCTGGGC TATCTGCCTTAAAGACTCCATATTGTTATGAGGAAGATTGCCCAAAAGAGGATCCGCTGTCGCAAGAGAGCTTCCGGAAGTTGGCATTGCCTCTACCGTA CTCTAAGCAGCACCACTCAAAGCTTGTCTGTTACATAACCAAAGAGCTGATGGATACTGAGAACCCGCCACAAGTCTTACCCAATGGCTATGTCTACAGC ACTAAGGCACTGGAAGAGATGGCGAAGAAGAACAACGGTAAGATAACCTGCCCAAGAACAGGTCTTGTCTGCAATTACTCAGAGTTGGGGAGGAGTGAAA TGATGATGAATCAAGGAGTTAATACGCAAACTGTGGATCCTGCGGACCCCAACTTGTTCGAGAGTCGATATGTACATGATGCGAGCCAGGGACAGACATC ATCATATCTTCCCTTGTCAACTGGTCCAGAAGCAGCTTCATGGACAGTGCATAAGGTAGAAGGTCATCCCTCACAGGACAGAGTGTTAGCTAGTGGAGGT TATCAACATGATCAGCAATCAGAGCCAGTCGTAAGAAACGTCCAGGATGGCTCGAATGCAACACCCCTTACCAGTTCATCAACTATTGGAGCAGCTAATG CAGTGCAAGACTACAATAGTTATGCATCATACTCAAATACTACAGAGCCCTACAATTATGGAAGTTCAGCATATCCGGGTTACTACAATGGCTACCAGCA ACAAACTAATAGTACATATTCTCAGCAGCAACCGAACAATGCATATTCTCAGCAGCAACCAAACAATGCATATCCTCAGCCGCAACAGAATAATGCGTAT TCTGTGCAGCAACCTAACGATTCGTACTCTCAGACTTTTGGAGCTTATCAAAACACAGGTGCTGCTTATCAGCCTAATTCCTCATTTCAGAATACTGGGT CTTATGCTGGGACTGCATCTTATTCAACCACTCACTACAATCCTGGTAATTATCAGACAGCAGGAGGTTACTCGAGCAGCGGACACAACAATCAAGCATC TGTTTGGAATAATGGAAATTATGCAAATTATACATCCTACCAGTATCCGAATTACAATTCAGATACTGCAAGTGCATATGGTTCTGGTACAGCGGCTACA ACTTATCAACAGCCATATAAGCAATGGCCAGACTATTACAGTCAAACAGAAGTGACATGTGCTCCGGGGACTGAACACTTGCCTGTTGCTAGTAACAGCA ATCCTGGAAGTTCGGTTCCCAGTACTTGTATCACCAGTGGGTACTCTACTCCTACCAACCAACCTCAGCCTCAGCCTCCGCTTCAGCATCAGCCTCAGTT TCCACCTCCTACATCCTTCACACCTACTTGGAGGCCAGAAACCAAATCATCTGAACTGCCTTCCGTACAGCCTGAAGGAGCAGCTAGTGGTGCTTATGAT AACTACTGGAACCAGCCAGCTCCAACTTTTCAAACCCATCTTGTTACTCCTGTTCAGCCACAATATCAAAACTCTATAGACTCAAAAACTACTTATGAAA ATTTTCAGGAACAGATGACTGCTCCTCAAGGATCTAATTCTCAATATCCTGTCGCTCATCAGGTGTCCAAGAGTTTTCCGTCCACTTTACAAAATGTGTC ATCATTTGACACACAAAGGGTAAACAATTTGCAGATTCCGACAAATCCTAGAATTGCTTCAAATGCAGCTATCGGTTTTGCAAAAACAGATAAGGGTAGA TTTGCAACCAATTCAGCTCCGAGACCAGCTTATGTTAGTGTCTCTGTGCCGAAGACAAATGACAAGGTGTCGTCAAATAGTGCTGCTGATTCCATGTTGA AGCCTACCATGTTCCCGAAGTCGTTGTGTGGATATGTTGAGAGAGCTTTGGGGCGACATAAAGATGATGATGCAAGAAGGGCAGCTTGTGAAGCAGTCAT GAAGGAGATCATCACCAAGGCGACTGCTGATGGTACGCTTTATACCAAAGACTGGGATAGTGAGCCTCTTTTCACAGTACCAGATTCTCATTTCATCAAT AAGGAGCTTTCATTCAGTTGCTATTCTGCCACCAAAGGTAATACTGCTTTCAACAATTTCAAATATTCTGCATCACAACAGAAAACTCCTGGTAAAAGTG CACAGAGGCCGACCAAGAGGCAACGTGTTAATAACACCGTTTTCACAAATAACGAAGACGGGTCAAGTGGCAGTGACAAAGAGCAAAGTTTGACTGCATA TTACTCCGGTGCAATGACATTGGCTAATAATCCAGATGAAAAAAAGAAACGAGAAAGTAGATGTAAGCGTTTTGAGAAAGGCCAAGGACATCGTCCTGAT ATTAATTATTTCAGACCAAAAAATGCTGGTCCTGCAAATGTGTTGTATAGCAGAAAAGCTAGTGCCATGATGCTTAGTAAGAGCTTTGATGACAGTGTAA ACCAAGCTGTTGAAGACATTGACTGGGATGCACTCACGGTTAAAGGAACTTGTCAACAGATTGAAAAACGATTTTTGCGTCTCACTTCTGCACCTGACCC TTCTACTGTCAGACCAGAAGATGTGCTAGAGAAAGCTTTATTAATGGTTCAGAATTCGGAAAAGAACTATCTTTTTAAATGTGATCAATTGAAATCTATT CGTCAAGATCTAACTGTACAGAGGATAAGGAATCAGTTAACAGTTAAGGTATATGAAACACATGCTAGATTAGCAATGGAAGTTGGGGACTTGGCTGAGT ACAATCAGTGTCAGTCACAGTTACAGATCCTCTACTCTGAAGGAATCGAAGGTTGTATCATGGAGTTTGCAGCTTACAACTTGCTTTGTGTCATCTTGCA CTCCAATAACAAGAGAGATCTTCTGTCATCAATGTCAAGATTAACACAAGAAGCAAAAGAGGATAAAGCAGTGAAACATGCTCTTGCGGTTATTGCTGCT GTCACTTCCGGAAATTATGTTACGTTCTTCAAACTATACAAGACAGCTCCCAACTTAAACACCTGCTTGATGGATCTTTACGTGGAAAAGATGCGGTACA AGGCTGTGGTCTGCATGTCTCGGTCATATCGCCCAATGATACCAATTTTATATATTGCACAGATGTTAGGATTCTCTGGTGCAGCTGAAGGAAATGGGGA GAGAGACTCGAGTGGTTTTGAGGAATGCTTAGAATGGTTGAAGGCCCATGGTGCTAGCCTGACCGCTGACAACAATGAAGTCGATGCTAAGGCGTCTTCT TCTACTTTATTCATGCCGGAACCTGAAGATGCGGTTGCTCATGGAGACTCCAATCTGGCGGTCAATGATTTCTTAGCGCGAACATCATAG
AA sequence Show only first row Show all	>Lus10001973 pacid=23140520 polypeptide=Lus10001973 locus=Lus10001973.g ID=Lus10001973.BGIv1.0 annot-version=v1.0 MEIDPIPNGNSAVNSVSTTASPMVTAPSSNLTRLTESLKLEHQFVRVPFEHYKKTIRVNHRAVEKEISSVVSGVNEAADSDLSKDDAVQHLTSLVSRLQG LKRKLEEGSRSENLQAQRCRARLNHLESADADNLTEWSNTRLKRILVDYMLRMSYYDTAMKLAESSNIQLPDRLVDTSTVLSLLSFEQTLSQDLVDIDVF QEARRVIDALQNKEVAPALAWCADNRSRLKKSKSKYEFQLRLQEFIELVRADNHMRAIAYARKYLSPWGATHMKELQRVMATLAFKSATECATYKVLFEP KQWDYLVGQFKQEFFKLYGMTLEPLLNIYLQAGLSALKTPYCYEEDCPKEDPLSQESFRKLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYS TKALEEMAKKNNGKITCPRTGLVCNYSELGRSEMMMNQGVNTQTVDPADPNLFESRYVHDASQGQTSSYLPLSTGPEAASWTVHKVEGHPSQDRVLASGG YQHDQQSEPVVRNVQDGSNATPLTSSSTIGAANAVQDYNSYASYSNTTEPYNYGSSAYPGYYNGYQQQTNSTYSQQQPNNAYSQQQPNNAYPQPQQNNAY SVQQPNDSYSQTFGAYQNTGAAYQPNSSFQNTGSYAGTASYSTTHYNPGNYQTAGGYSSSGHNNQASVWNNGNYANYTSYQYPNYNSDTASAYGSGTAAT TYQQPYKQWPDYYSQTEVTCAPGTEHLPVASNSNPGSSVPSTCITSGYSTPTNQPQPQPPLQHQPQFPPPTSFTPTWRPETKSSELPSVQPEGAASGAYD NYWNQPAPTFQTHLVTPVQPQYQNSIDSKTTYENFQEQMTAPQGSNSQYPVAHQVSKSFPSTLQNVSSFDTQRVNNLQIPTNPRIASNAAIGFAKTDKGR FATNSAPRPAYVSVSVPKTNDKVSSNSAADSMLKPTMFPKSLCGYVERALGRHKDDDARRAACEAVMKEIITKATADGTLYTKDWDSEPLFTVPDSHFIN KELSFSCYSATKGNTAFNNFKYSASQQKTPGKSAQRPTKRQRVNNTVFTNNEDGSSGSDKEQSLTAYYSGAMTLANNPDEKKKRESRCKRFEKGQGHRPD INYFRPKNAGPANVLYSRKASAMMLSKSFDDSVNQAVEDIDWDALTVKGTCQQIEKRFLRLTSAPDPSTVRPEDVLEKALLMVQNSEKNYLFKCDQLKSI RQDLTVQRIRNQLTVKVYETHARLAMEVGDLAEYNQCQSQLQILYSEGIEGCIMEFAAYNLLCVILHSNNKRDLLSSMSRLTQEAKEDKAVKHALAVIAA VTSGNYVTFFKLYKTAPNLNTCLMDLYVEKMRYKAVVCMSRSYRPMIPILYIAQMLGFSGAAEGNGERDSSGFEECLEWLKAHGASLTADNNEVDAKASS STLFMPEPEDAVAHGDSNLAVNDFLARTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	0	1
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	1.4	0.9464
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	1.7	0.9525
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	3.2	0.9233
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	4.2	0.9236
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	4.6	0.9365
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	4.7	0.9166
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	5.0	0.9264
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10006528 [exp]	5.0	0.9111
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	7.9	0.9261
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	8.1	0.9262

Compare expression of checked genes

Lus10001973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.