Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55060 541 / 4e-179 unknown protein AT2G39300 414 / 5e-131 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030304 [exp] 1459 / 0 AT3G55060 595 / 0.0 unknown protein Lus10019883 [exp] 77 / 2e-15 AT2G39300 56 / 8e-09 unknown protein Lus10014034 [exp] 71 / 3e-13 AT2G39300 78 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214300 [exp] 810 / 0 AT3G55060 674 / 0.0 unknown protein Potri.008G047200 [exp] 761 / 0 AT3G55060 637 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001974 pacid=23140505 polypeptide=Lus10001974 locus=Lus10001974.g ID=Lus10001974.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTATTCTTTTTTCGGTCTTCCTCCAACGATGGAAGCAGCAACGCTGGTTCTCCAACTTCAAAAAATGAGAACCGAGCAGGGAATGGACTAA GTGATCACAGTGGGGACAAGTCCGAGAACCATTTCAGAAGTCCAAAGGGCTTGTTTTCCAAGTCAAGAAAGCAAGTTCATGGTAGTCAAAGTCCAAGTTC CAATCCCACTCTACGGAAAAGTCGCTCTTATACATCTGGATCATTTCTACTGGATGACATTGGGCAGTCAAACTTCTTGGTTCCAGTAGAACGTAGTAAA TCTCCTAGCACCTATTCTTCTCGTAGCAGTAGACGTGCTCCTACTCCTCCAAGGCAAGTTCGATCAGAGCAACTTGAAGTATTTGGATTGCAGAGGCATA CTTCTGGTTCGTCCAAGCCTTATCAGGATCGTTCTGGGAGTTCATCATCCAGCAATGCTTCAACTAAGGTTTTGGATCGCTATATAGATGGGGAGGAACA AGAAGAAAGAGGGAGACCCAAAAAAGTTTCTTCTCAGAGATACGTTACCGGGAGTGGTAATCCAGGTGGGAAACTCCCTCCTCGAACCCAATACACAGCC CCTGCTTCACCAACACATCCTGTTAGAGACAAACCCAAGGGTCACTCATTTAGGGAATCAAAACGTATTCATCCCCATTTCTCTTCCAGTGATTGGATGG GGAATGAGTTTGGTCATGGATCTCCCAGGAGACTTGCAAAGAATGTTATTGAAAGACTTGCCCTAACTCATGGTTTCCCTAAATCCAATTCGAAAGAGGT TGATTGCGATATTCCAATCACAATTGAAGATGTTTATGGTGGCTCTCTAAGTAGATGTTTTGACACAAATTCAGATGCTCTACACCAGAACTGTTCTCTG GAAGAGTCATGTGATAGTCTTAACAGATATCATGAAGACAATTTCTTGGGATACCAGAGTCAAGAAGTTTTTGGAGGAGAAGATTTCAGGGATATAAAAT CTGTGAAAGCTGAGAGTCCAGTTGATTTAGAACTGGAAAGAAGATCAAAAGAAGCTGAGGAGAGGGTTGTAGTTCTGTCTGAAGAGCTTGAGCAGGAAAG CTTTCTCCAAAATTTTGGGTTTGATAGTCCGTCATTTGTTCACTTTGTGAGGAACCTAATGGAGGACAGGGTAAGTATGGCAATTGAGATTTCAGGGCTT CTAAAGTCTCGAATTGTGGAGAGGGATTCTGCCACGGAAGAAGTTAAATTGGCAAAGACAGAACAAGAGGCAAAGTGTCTACGAGTTGAGAAAGAGAAGA ATGAACTGCAGTCAGCATTGGAGAAAGAGTTGGATAGAAGGTCAAATGATTGGTCATCAAAACTTGAGAAGTACCAGCTAGAGGAGCACAGATTGCGTGA GAGGGTAAGAGAACTCGCGGAGCAGAATGTCTCGCTCCAGAGGGAACTCTCTGGCTTCAGTCAAAGAGAGACAGAAAGTAAAAGTGTGTTGACTTATTCA GAGCAACAAGTTAGACAGCTGACTTCAACTGTGCAAGAGTTGACCCAAGAAAATGAACAGTTGCAACAAAACCTTTCTGGGGTTCAGGAGCATTATAGAG CAATTAAACAGGATCTGAATTGTGTCAGAAGAAGCTTTGAAGCTAAGGATAAAGAGTCAAAGGAGTCACAAAAGTCAATTACGAGGCTGTTGCGAACCTG CAGTGAGCAGGAGAAGACAATTATTGGACTGCGGGATGAATTTGGTGCTGAAACGGAGAGGGAGCAATCACCAGGATTACTTGATAAGCATGTAACAAAG TTGCGCATGGAACTAATGAGGTTAGCTGGAGTAGAACTGTCGCTTAGAAGAGAGGTTGAGAATCAAAGATTTGAAGTTGATTCCCTTCGACATGAAAATA TGAATCTACTGAATCGATTGAAGGGAGGTGGGAATGAGATTCATGCTGTAACTCTTAAACTAGATCAAGAGATGTGGACCCGTCTGTCTTTCCTCCAAAA TCAGGGATTAGCTTTGCTGAATGACAGCACCCAATTGTGCTCCAAGTTGTTGGAGCAACTCAAAGGGAATTCTGGTGAATGTGTAGAAACAGCACATCGG ATGGAGTTCATCAGAAATGGTTTAGATGGGCATTTCATTGTTGAAGCAGATGTAAAAGTTCAGGGTTTTAGGCGTGGAGTTGAGAGCCTAACGAGGAGTT TGCAGTCAGTTGCATCTTTAATGCAGGAAAAGTCAAATCTTGTTGCTCCAACGTGCCAGTCTCTGCATTCAAGTGGTGATGATGCTATGGGAAAGCTAAT ATCAGAGGATGCATTGAAGTGGGAACTAAAAGCGGAGGTGCAGCTGACAAGTCTGCTACGAGAGAAGCTTTATGCTAAAGAGATGGAAGTTGAACAGTTG GAAGCTGAGATTGCAGCAGCTATGTGCAAGAAGGACGAAATTGCAAGTCAGCTTCAACAGGATGTCCAAGAATCTATGAAAGAGATGTCGGTAACGAAGG GGATGCTGCAGAAAGTAACGCAAGAGAGAGACTTGGTGTGGGAGGAAGTGAAGCAGTACAATGAGAAGAACATGCTATTGAACTCAGAGGTAGGTGTGTT GAAGAAGAAGCTGGAGTCTCTCGAGGAAGAAATACTGGTGAAGGAGGGAGAGATCACAATCCTCAAGGACAACTTACGGAAGAGACCCTTCGACCTCCTC GCTGATCTTGATTCGTCAGAAGGCTTCCTGCTATAG
AA sequence Show only first row Show all	>Lus10001974 pacid=23140505 polypeptide=Lus10001974 locus=Lus10001974.g ID=Lus10001974.BGIv1.0 annot-version=v1.0 MKKLFFFRSSSNDGSSNAGSPTSKNENRAGNGLSDHSGDKSENHFRSPKGLFSKSRKQVHGSQSPSSNPTLRKSRSYTSGSFLLDDIGQSNFLVPVERSK SPSTYSSRSSRRAPTPPRQVRSEQLEVFGLQRHTSGSSKPYQDRSGSSSSSNASTKVLDRYIDGEEQEERGRPKKVSSQRYVTGSGNPGGKLPPRTQYTA PASPTHPVRDKPKGHSFRESKRIHPHFSSSDWMGNEFGHGSPRRLAKNVIERLALTHGFPKSNSKEVDCDIPITIEDVYGGSLSRCFDTNSDALHQNCSL EESCDSLNRYHEDNFLGYQSQEVFGGEDFRDIKSVKAESPVDLELERRSKEAEERVVVLSEELEQESFLQNFGFDSPSFVHFVRNLMEDRVSMAIEISGL LKSRIVERDSATEEVKLAKTEQEAKCLRVEKEKNELQSALEKELDRRSNDWSSKLEKYQLEEHRLRERVRELAEQNVSLQRELSGFSQRETESKSVLTYS EQQVRQLTSTVQELTQENEQLQQNLSGVQEHYRAIKQDLNCVRRSFEAKDKESKESQKSITRLLRTCSEQEKTIIGLRDEFGAETEREQSPGLLDKHVTK LRMELMRLAGVELSLRREVENQRFEVDSLRHENMNLLNRLKGGGNEIHAVTLKLDQEMWTRLSFLQNQGLALLNDSTQLCSKLLEQLKGNSGECVETAHR MEFIRNGLDGHFIVEADVKVQGFRRGVESLTRSLQSVASLMQEKSNLVAPTCQSLHSSGDDAMGKLISEDALKWELKAEVQLTSLLREKLYAKEMEVEQL EAEIAAAMCKKDEIASQLQQDVQESMKEMSVTKGMLQKVTQERDLVWEEVKQYNEKNMLLNSEVGVLKKKLESLEEEILVKEGEITILKDNLRKRPFDLL ADLDSSEGFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55060			unknown protein		Lus10001974 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	6.7	0.6802
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	12.1	0.7094
AT5G40740			unknown protein		Lus10014617 [exp]	16.2	0.7114
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	20.8	0.6738
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	28.8	0.6277
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	30.2	0.7068
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	32.9	0.6575
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	41.2	0.7070
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	45.6	0.6552
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	45.6	0.6768

Compare expression of checked genes

Lus10001974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.