Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08790 469 / 7e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G12040 145 / 1e-40 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT2G27450 91 / 1e-20 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT3G44310 73 / 3e-14 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44300 71 / 9e-14 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 71 / 1e-13 AtNIT3, NIT3 nitrilase 3 (.1) AT5G22300 51 / 4e-07 AtNIT4, NIT4 nitrilase 4 (.1) AT5G64370 50 / 2e-06 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030303 [exp] 576 / 0 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10026464 [exp] 143 / 1e-39 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 93 / 1e-21 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 81 / 6e-17 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10005201 [exp] 61 / 2e-10 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 54 / 7e-08 AT5G22300 561 / 0.0 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047100 [exp] 539 / 0 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.010G214600 [exp] 529 / 0 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.006G222900 [exp] 144 / 9e-40 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G201400 [exp] 90 / 2e-20 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.007G115900 [exp] 42 / 0.0004 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10001975 pacid=23140506 polypeptide=Lus10001975 locus=Lus10001975.g ID=Lus10001975.BGIv1.0 annot-version=v1.0 ATGCCATTTTGTGTCCACAGCTTGATCACTGTTCCAACCACAGCAAAACCCCCCTTCCTTAATCCAATCACCACTCACGTGCCTCCCCGGTCGTTGACCG TTAAGTCACGTGCTTCCACCCCCTCCGGCGAGTTAACCATGGCGTCGACGAACTCAGTCCGAGTCGCCGCCGCTCAGATGACTTCCATCAACGACCTCGC TGCCAACTTCGCTACCTGTACTCGCCTTGTCAAAGAAGCAGTATCTGCTGGGGCAAAATTGCTTTGTTTACCTGAAAGTTTCTCTTACATTGGAGCCAGG GATGGGGACAGTGTTAAGATTGCAGAGCCTCTTGATGGACCAATTATGAAACAGTATTGCTCCTTGGCAAGAGAGTCAGGAATTTGGCTATCTTTAGGAG GTTTCCAAGAAAGAGGATCTGATGATGCACACTTGTGCAATACCCATGTAATAGTTGATGATGGCGGGAATATCAGAAGCACCTATCGGAAGATACACCT GTTTGATGTGGATGTTCCGGGTGGAAGGGTGTACAAGGAAAGCAGCTTCACAGAAGCTGGAAAAGATATAGTTGCAGTTGACAGTCCTGCCGGACGCTTG GGTTTGACTGTATGCTATGATTTGAGATTTCCCGAGCTTTACCAGCAACTGCGTTTCCAACATGAAGCTCAGATTCTGTTAGTGCCTTCAGCTTTTACAA CAATAACCGGTGAGGCACACTGGGAGATTCTTCTTCGTGCTCGTGCAATTGAGACACAATGCTATGTAATAGCTGCAGCACAGGGCGGTAAGCACAATGA GAAAAGAGAGAGCCACGGTGAGACATTGATAATTGATCCATGGGGCACAATAGTGGGTCGATTGCCAGATCGAACTTCAACTGGGATTACTGTGGCTGAT ATTGATTTCTCGCTCATCGATTCAGTTAGAACAAAATTACCAATTGCTAAGCAACGCCAGCTTATCGACTTCTGGAAATCTTCATCTATGTGA
AA sequence Show only first row Show all	>Lus10001975 pacid=23140506 polypeptide=Lus10001975 locus=Lus10001975.g ID=Lus10001975.BGIv1.0 annot-version=v1.0 MPFCVHSLITVPTTAKPPFLNPITTHVPPRSLTVKSRASTPSGELTMASTNSVRVAAAQMTSINDLAANFATCTRLVKEAVSAGAKLLCLPESFSYIGAR DGDSVKIAEPLDGPIMKQYCSLARESGIWLSLGGFQERGSDDAHLCNTHVIVDDGGNIRSTYRKIHLFDVDVPGGRVYKESSFTEAGKDIVAVDSPAGRL GLTVCYDLRFPELYQQLRFQHEAQILLVPSAFTTITGEAHWEILLRARAIETQCYVIAAAQGGKHNEKRESHGETLIIDPWGTIVGRLPDRTSTGITVAD IDFSLIDSVRTKLPIAKQRQLIDFWKSSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	0	1
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	2.0	0.8733
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	3.7	0.8548
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	5.5	0.8494
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	6.3	0.8327
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	7.7	0.8043
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	9.2	0.8455
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	9.5	0.8074
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	12.1	0.7834
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	14.4	0.8150
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	15.2	0.8130

Compare expression of checked genes

Lus10001975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.