Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 493 / 7e-176 Protein phosphatase 2C family protein (.1.2) AT3G55050 488 / 4e-174 Protein phosphatase 2C family protein (.1.2) AT4G38520 429 / 2e-150 Protein phosphatase 2C family protein (.1.2) AT3G51370 423 / 1e-148 Protein phosphatase 2C family protein (.1.2) AT5G66080 407 / 4e-142 Protein phosphatase 2C family protein (.1) AT5G02760 392 / 1e-136 Protein phosphatase 2C family protein (.1) AT3G17090 316 / 2e-106 Protein phosphatase 2C family protein (.1.2) AT5G06750 290 / 6e-96 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 289 / 9e-96 Protein phosphatase 2C family protein (.1) AT3G16560 129 / 2e-33 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030302 [exp] 633 / 0 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 572 / 0 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 571 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 446 / 4e-157 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 423 / 6e-148 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 419 / 2e-146 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 403 / 1e-140 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 402 / 1e-139 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 401 / 1e-139 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214700 [exp] 561 / 0 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 555 / 0 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 451 / 5e-159 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 444 / 1e-156 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 437 / 1e-153 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 436 / 2e-153 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 426 / 5e-150 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 343 / 5e-117 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 336 / 2e-114 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 320 / 1e-107 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10001976 pacid=23140512 polypeptide=Lus10001976 locus=Lus10001976.g ID=Lus10001976.BGIv1.0 annot-version=v1.0 ATGGTTTCAACTACAGTTATGAGAATCGTTTCAAACTGCTGGAGGCCTTCAGTAGAGGGAGAATCTAATAGAGGTGGAGATGCCAGTGGCCGTGCTGATG GGTTGTTGTGGTATAAAGATTCCGGGCGGCATGTGAATGGGGAGTTCTCAATGGCATTAATTCAAGCGAATAATCTACTTGAAGATCAAAGCCAACTTGA ATCTGGCCCAATGAGCTCTCTTGAATCAGGTCCTCAAGGTACATTCGTGGGAGTTTATGATGGTCATGGAGGTCCTGAAGCTGCCCGGTTCGTAAATGAT CGCCTTTTTGACAATATTAAGACCATTAATGGTGCAGAATTTACAGGTGAGAGTCGAGAAATGTCAAGTGATGTCATCACCAAAGCCTTTTTGGCTACAG ACGAGGAGTTCCTTTCTCTAGTGAAGAATCAGTGGCTAAATAAGCCACAGATTGCTTCTGTTGGAGCATGTTGTTTAGTAGGCATAGTATGTAGTGGAGT TCTATACATTGCAAATGCTGGTGATTCTCGTGCGGTATTAGGAAGACTGGAGAAAACCATGAAGGAAGTTAAGGCCATTCAGTTATCTTCAGAACACAAT GCAAGTATAGAATCCGTGAGAGACGAGTTGCAAGCATTACATCCCGACGATCCCCATATTGTGGTTCTAAAACACAAGGTTTGGCGCGTAAGGGGACTTA TCCAGGTGTCTCGATCACTGGGTGATGCATACCTGAAGCGAGTAGAATTTAACAGAGAGCCTCTGTTGGCAAAATTCAGATTGCCGAATCCGTTTGAAAG ACCAATCCTGTTGGCGGAGCCAGCAATCACGGTGCAAAGACTGATTCCTGAGGATCTATTTGTTATTTTTGCATCAGACGGCCTTTGGGAGCATCTGACC AACCAAGAGGCAGTTGACATTGTTCATAATTGTCCCCGAAATGGCGTAGCAAGGAAGCTACTAAAGGCTGCACTCCATGAAGCAGCAAAGAAGAGGGAAA TGAGATACTCAGCCTAG
AA sequence Show only first row Show all	>Lus10001976 pacid=23140512 polypeptide=Lus10001976 locus=Lus10001976.g ID=Lus10001976.BGIv1.0 annot-version=v1.0 MVSTTVMRIVSNCWRPSVEGESNRGGDASGRADGLLWYKDSGRHVNGEFSMALIQANNLLEDQSQLESGPMSSLESGPQGTFVGVYDGHGGPEAARFVND RLFDNIKTINGAEFTGESREMSSDVITKAFLATDEEFLSLVKNQWLNKPQIASVGACCLVGIVCSGVLYIANAGDSRAVLGRLEKTMKEVKAIQLSSEHN ASIESVRDELQALHPDDPHIVVLKHKVWRVRGLIQVSRSLGDAYLKRVEFNREPLLAKFRLPNPFERPILLAEPAITVQRLIPEDLFVIFASDGLWEHLT NQEAVDIVHNCPRNGVARKLLKAALHEAAKKREMRYSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10001976 [exp]	0	1
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	3.2	0.9062
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	6.0	0.8879
AT5G57370			unknown protein		Lus10001311 [exp]	6.9	0.9061
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009942 [exp]	12.1	0.8772
AT5G22040			unknown protein		Lus10008373 [exp]	18.7	0.8861
AT1G11320			unknown protein		Lus10017280 [exp]	22.4	0.9005
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	28.1	0.8997
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	31.0	0.8806
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	41.6	0.8919
AT1G03910			unknown protein		Lus10021530 [exp]	44.6	0.8907

Compare expression of checked genes

Lus10001976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.