Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39290 291 / 2e-99 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1) AT3G55030 279 / 1e-95 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1) AT4G04870 54 / 2e-08 CLS cardiolipin synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030301 [exp] 412 / 3e-148 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1) Lus10023471 [exp] 325 / 8e-112 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1) Lus10040348 [exp] 303 / 4e-102 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1) Lus10007662 [exp] 50 / 3e-07 AT4G04870 304 / 1e-103 cardiolipin synthase (.1) Lus10018349 [exp] 50 / 7e-07 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046700 [exp] 302 / 9e-103 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.010G214900 [exp] 296 / 3e-102 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.004G018300 [exp] 56 / 5e-09 AT4G04870 351 / 1e-120 cardiolipin synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001977 pacid=23140511 polypeptide=Lus10001977 locus=Lus10001977.g ID=Lus10001977.BGIv1.0 annot-version=v1.0 ATGGGATCCGATCATAATAATAATAACAACAACAGCAGCAACAAGCTCTCCCCCGCCATTAACGGTTTCGATCAGCCGTCCCGCGATCATCACAATCACA AGCACCAATGCTCCACCAAGTTGCTCACCTTGCCTACCATTTTGACCCTCGGCCGCGTTGCCTCCGTCCCGCTTCTTATCTTCACCTTTTACATGGACAC TTGGCTGGGAAGAACTGCTACGACCAGTATTTTTGTTGCTGCAGCGGTTACGGATTGGCTTGATGGATACATTGCACGCAAGATGAGGTTAGGATCTGCC TTCGGTGCATTTTTGGACCCTGTAGCTGACAAGTTGATGGTTGCTGCTACCTTGGTCCTCTTGTGTACCCGACCCTTGGATTTTCCAATGTTTGGATCTG TATCATGGCTACTCACTGTTCCTTCAATTGCTATCATTGGCCGGGAGATAACAATGTCTGCTGTCAGAGAATGGGCGGCTTCACAAAGTACAAAGCTTCT TGAGGCTGTTGCTGTAAATAACTTGGGGAAATGGAAAACTGCGACACAGATGACTGCATTAACCATTCTGCTTGCTATCCGAGATGGAGGTGGTGGAAGT CCCGCGACATTGGTAACTTCTGGTGCAATTTTGCTGTATATTTCAGCAGGTCTCTCTGTATGGTCTTTGGCTGTGTATATGAGTAAGATATGGAAAGTAC TCCTCAAGTAG
AA sequence Show only first row Show all	>Lus10001977 pacid=23140511 polypeptide=Lus10001977 locus=Lus10001977.g ID=Lus10001977.BGIv1.0 annot-version=v1.0 MGSDHNNNNNNSSNKLSPAINGFDQPSRDHHNHKHQCSTKLLTLPTILTLGRVASVPLLIFTFYMDTWLGRTATTSIFVAAAVTDWLDGYIARKMRLGSA FGAFLDPVADKLMVAATLVLLCTRPLDFPMFGSVSWLLTVPSIAIIGREITMSAVREWAASQSTKLLEAVAVNNLGKWKTATQMTALTILLAIRDGGGGS PATLVTSGAILLYISAGLSVWSLAVYMSKIWKVLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	0	1
AT5G67350			unknown protein		Lus10010401 [exp]	1.0	0.9305
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	1.7	0.9096
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	2.0	0.9121
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	3.5	0.9077
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	6.5	0.8964
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	6.9	0.8935
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	7.1	0.9053
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	7.3	0.8951
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	7.5	0.8902
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	7.7	0.8893

Compare expression of checked genes

Lus10001977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.