Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13610 430 / 1e-149 Protein of unknown function (DUF155) (.1) AT1G69380 335 / 1e-112 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030300 [exp] 634 / 0 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1) Lus10036803 [exp] 340 / 1e-114 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Lus10037127 [exp] 301 / 5e-100 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045200 [exp] 506 / 3e-179 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1) Potri.010G216300 [exp] 486 / 1e-171 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1) Potri.010G162500 [exp] 351 / 5e-119 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Potri.008G092400 [exp] 349 / 3e-118 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02582 [flax] [poplar] DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence Show only first row Show all	>Lus10001978 pacid=23140514 polypeptide=Lus10001978 locus=Lus10001978.g ID=Lus10001978.BGIv1.0 annot-version=v1.0 ATGTTGCGCTTGATTGATTCTCGCCTCAGAATCGTCCGATTCCCTCTCCGTACGCTTCTTTCCCCTCCCCCGAACCCTAATTCCACACTCCATCATCTTC CTCTCCCTCATCTCACTCCTCTCTCCGATTCCCGCTCCTTCAAGACCATCGCCGCCGTTTGCTCCGCTTCCTCTTCTCCCGCTCTCGCTTTCTACATTGG CGGCTGCCTCACTCTTGTTCTCGGTACTGGGAGGTGGTGCCACGGAACTGCCAGGTGCGTGTCTTCGCTCTCTTCCTCGCTACCGCAACAGCAGCAGCAG GAGCTGAATACTTGGAATGAGCCGGTATCGTGCTCTGAGGTTGGAGATGGCACGGTGGAAGTAGAAGATGGAGGTAATGCCGTGGAGGAGGATGCCAAGC CAGCCATTCCTGTCCGTTCTTGTATCTTCTCTACTAGTGTGGATTTGAAGAGCTTAGTGGAACAAAACAAGCCCAACTTTGTCCCGCCCACTTCTCGTAT GACTAATTATGTTCTCCTCAAGTTTGGAGATCTATCAGTATCAAGTGGCTCTGGTACTTGTATAAGCGGAAGTGATTGCTGTTACATGGTGGTATTTCAA TATGGATCAATCGTCTTGTTTAATGCCCGTGAACAAGAAGTGGATGGTTACTTAAAAATCGTTAAGAATCATGCTTCCGGTTTGCTTCCTGATATGAGAA AGGATGAGTATGAGGTGAGGGAGAAGCCAACTCTTGACACTTGGATGGAAGCTGGATTGGATCATATAATGTTGCAGTATTTGAACATTGACGGCATTCG TACTATTGGTAGTGTCCTTGGCCAAAGCATTGCTCTTGACTACTATGGACGTCAGGTTGATGGAATGGTTGCTGAATTCACTGACATTAACCGCGGGATG GAGAAAACTGGAACATTTTCCATGGACAGTAAGAAGCTTTTCCAATTAGTTGGCAAAGCTAATTCCAATCTTGCGGACATCATTCTTAAGCTGGGGCTTT TCGAGAGATCCGATATTGCATGGAAAGATGCTAAATACGGTCAGATATGGGAATACCTGAGAGATGAGTTTGAACTAACTCAGAGATTTGCAAGTCTGGA TTTTAAGTTGAAGTTTGTGGAGCACAATATCCGGTTCCTACAGGAAATTCTGCAGAACAGGAAATCAGACTTTCTGGAATGGCTAATCATCGTGTTGATT AGTGTTGAAATAGTGATTTCTGTGTTTGACATTTCACACAGGTCCGGATTGAATTTGATCTAG
AA sequence Show only first row Show all	>Lus10001978 pacid=23140514 polypeptide=Lus10001978 locus=Lus10001978.g ID=Lus10001978.BGIv1.0 annot-version=v1.0 MLRLIDSRLRIVRFPLRTLLSPPPNPNSTLHHLPLPHLTPLSDSRSFKTIAAVCSASSSPALAFYIGGCLTLVLGTGRWCHGTARCVSSLSSSLPQQQQQ ELNTWNEPVSCSEVGDGTVEVEDGGNAVEEDAKPAIPVRSCIFSTSVDLKSLVEQNKPNFVPPTSRMTNYVLLKFGDLSVSSGSGTCISGSDCCYMVVFQ YGSIVLFNAREQEVDGYLKIVKNHASGLLPDMRKDEYEVREKPTLDTWMEAGLDHIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINRGM EKTGTFSMDSKKLFQLVGKANSNLADIILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIVLI SVEIVISVFDISHRSGLNLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13610			Protein of unknown function (D...		Lus10001978 [exp]	0	1
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	4.7	0.8407
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	14.7	0.8358
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	30.4	0.8113
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	38.1	0.8024
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	38.5	0.7911
AT2G21580			Ribosomal protein S25 family p...		Lus10034277 [exp]	41.2	0.7866
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10023660 [exp]	43.2	0.7871
AT5G57120			unknown protein		Lus10001627 [exp]	46.7	0.7849
AT3G05130			unknown protein		Lus10002255 [exp]	74.4	0.7811
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	78.8	0.7820

Compare expression of checked genes

Lus10001978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.