Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15010 462 / 4e-163 Mitochondrial substrate carrier family protein (.1.2.3) AT1G79900 57 / 6e-09 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G03115 47 / 1e-05 Mitochondrial substrate carrier family protein (.1) AT5G19760 44 / 9e-05 Mitochondrial substrate carrier family protein (.1) AT1G34065 42 / 0.0006 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G58970 41 / 0.0008 ATUCP2 uncoupling protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030299 [exp] 729 / 0 AT4G15010 485 / 2e-172 Mitochondrial substrate carrier family protein (.1.2.3) Lus10037544 [exp] 50 / 2e-06 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 47 / 2e-05 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 45 / 4e-05 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 45 / 7e-05 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 45 / 8e-05 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 43 / 0.0003 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 42 / 0.0007 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004565 [exp] 41 / 0.0008 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222400 [exp] 526 / 0 AT4G15010 446 / 2e-156 Mitochondrial substrate carrier family protein (.1.2.3) Potri.003G053900 [exp] 51 / 5e-07 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 47 / 7e-06 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 47 / 2e-05 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.003G220400 [exp] 46 / 2e-05 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.010G121500 [exp] 46 / 3e-05 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.001G004500 [exp] 45 / 4e-05 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 44 / 0.0001 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.014G135530 [exp] 43 / 0.0002 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 42 / 0.0005 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10001980 pacid=23140509 polypeptide=Lus10001980 locus=Lus10001980.g ID=Lus10001980.BGIv1.0 annot-version=v1.0 ATGGATGAACTGCTGAAGAACCACCTGTTTGCGACACATGCATTTGCTGGTGCAGGCTCAGTGGCTCTGGGCACTGCACTAACTTACCCACTTGATACTA TCAAGGTCCTTACCCAGGTTGGTTCAAGCTCTAATAAACAGTTGACTCCACTTTCAGTTTTAAGAAGAGTTCAATCTTTGTCAGGCAATTCAGGTGTATA TAATGGATTGGGCTGGTTAACTTCAGCTAGGATTGTTGGACTTGGTACTCGCTTTGGCGTCTATGAAATTTTGACAGCATTTTATAAAGATGGTCGAGAA AACAACAATGTATATGTCCATGAGGCCCTCATGGCTGGGATGGTAGCTGGTGCTGTTGAGTCGCTCACAAGCTCCCCATTTGAATTTGTCAAACTTCGAG CACAGGTTACCTCTGCCTCTCGCGTTCCAAGTTCCACATCTGTTATGGAATCTCGAGCTGTTGGACCTGCGGTTTCTAAGCTACTGCATGGATACACTCC AGATGTGAAGGCACTGAACCAATCCACTGCCCTTTTGTCTACGTTATCTACTAAACATCCAGATCTAGTTGGTGCACTAAGAGAGTATCCATGGATGATG ACTGGTTCCGGGAGGCCACCATCAGTAAGCGATGTCTGCAAACTATCTAATATAATATCCCTGGAAGGATGGAGTGCTTTCTGGAGAGGGCTCCGGTCTG GGATCGCTCGAGATTCTATATTTGGTGGGACATTCTTTTGCAGTTGGCAGTTCCTTCATCGAGCAATGCTTGACTGGAAAGCAGTCGGGATGGTTCCCGA GCCTAGGTTTGATGACGAAATTGGACCTCTGTCTCCGTTAGCTGTCAGTGCTGCTGCTGGGTTTTCTGGATCCATTGCGGCTGCTGCCTCTCATTGTTTT GATACGGCGAAATGTCGATTCCAATGTACAGTGCTGCCCAAGTATCTTCAAATGGAGAGGGCACTGCTGAAATGGCGTAGGCCAGGGACTCGATTCGAAA GAGCTACCGGAATCCACCCTGCAGATAGGAATGTCTTGTTCCGCGGAATCTGGCTGCGCATGGCTCGCAGTGGAATTGCTTCGTTTGTTCTAGTAGGAAC ATATTATTTGGCTGTGGATCAGCTTCTTTGA
AA sequence Show only first row Show all	>Lus10001980 pacid=23140509 polypeptide=Lus10001980 locus=Lus10001980.g ID=Lus10001980.BGIv1.0 annot-version=v1.0 MDELLKNHLFATHAFAGAGSVALGTALTYPLDTIKVLTQVGSSSNKQLTPLSVLRRVQSLSGNSGVYNGLGWLTSARIVGLGTRFGVYEILTAFYKDGRE NNNVYVHEALMAGMVAGAVESLTSSPFEFVKLRAQVTSASRVPSSTSVMESRAVGPAVSKLLHGYTPDVKALNQSTALLSTLSTKHPDLVGALREYPWMM TGSGRPPSVSDVCKLSNIISLEGWSAFWRGLRSGIARDSIFGGTFFCSWQFLHRAMLDWKAVGMVPEPRFDDEIGPLSPLAVSAAAGFSGSIAAAASHCF DTAKCRFQCTVLPKYLQMERALLKWRRPGTRFERATGIHPADRNVLFRGIWLRMARSGIASFVLVGTYYLAVDQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15010			Mitochondrial substrate carrie...		Lus10001980 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	53.8	0.6602
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	59.3	0.6206
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	63.5	0.6560
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	70.6	0.6092
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10008279 [exp]	131.7	0.6183
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	135.5	0.5927
AT1G04570			Major facilitator superfamily ...		Lus10023708 [exp]	143.5	0.6112
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	146.1	0.5847
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	147.5	0.6097
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006120 [exp]	175.6	0.5969

Compare expression of checked genes

Lus10001980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.