Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13510 306 / 2e-106 EMB3136 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1) AT3G12370 194 / 6e-63 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030298 [exp] 228 / 4e-77 AT5G13510 184 / 3e-60 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215900 [exp] 324 / 2e-113 AT5G13510 300 / 4e-104 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1) Potri.008G045800 [exp] 316 / 2e-110 AT5G13510 273 / 2e-93 EMBRYO DEFECTIVE 3136, Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Lus10001982 pacid=23140504 polypeptide=Lus10001982 locus=Lus10001982.g ID=Lus10001982.BGIv1.0 annot-version=v1.0 ATGGATACCGCTCTCTGCTCATTGCCCTCCCAATTCCAGCTCCGTCCCTCAAACCCATTCTCCCTCTCTTTGCCCGCGACCGCTTCCTCTTCTTCCACTT CGTTCCGCCGCCGCCGCTGCCTGACAATTCAATCCGCCATTTCCCGCACCAGAAAGGAAGAAACCGTCGATAGCGTCAAAACCCAGTTGGAGAACTGCTA CCTCATAGCCGCTATCCAGTACAAAGGCCTCACCGTCAAGAATCTTCAAGATTTTCGGCGGTCGTTGCCGGATTCTTCCAAGCTGCTTGTGGCCAAGAAT ACTCTTGTTTACAAGGCAATCGAAGGTACCCCTTGGGAGGCCCTCAAGCCTTGTATGACTGGCATGAATGCTTGGCTCTTTGTACACTCGGAAGAGATCC CTGAGGCCATTAAGCCTTACAGGAGTTTCCAGAAGGAGAATAAGTTGGAGGAAAATGATTTCGGGGGCGCTGTTTTCGAAGGCAAGTTCTATGCACCTGA CGAGTTCAAGCAGCTGGAGACAATGCCGTCAAGGGCCGAGATTTATGCCAAGCTCTTGGGTTCATTGCAGACCCCGGCTATTGGCTTGATCACTACATTG CAGGCCCCTGCTAGGGATGTGGTTATGGTTCTCAAGGCTTATGTAAAAAAATTGGAGGATGAGCAAGCTGCTGATGGCCAATAG
AA sequence Show only first row Show all	>Lus10001982 pacid=23140504 polypeptide=Lus10001982 locus=Lus10001982.g ID=Lus10001982.BGIv1.0 annot-version=v1.0 MDTALCSLPSQFQLRPSNPFSLSLPATASSSSTSFRRRRCLTIQSAISRTRKEETVDSVKTQLENCYLIAAIQYKGLTVKNLQDFRRSLPDSSKLLVAKN TLVYKAIEGTPWEALKPCMTGMNAWLFVHSEEIPEAIKPYRSFQKENKLEENDFGGAVFEGKFYAPDEFKQLETMPSRAEIYAKLLGSLQTPAIGLITTL QAPARDVVMVLKAYVKKLEDEQAADGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	0	1
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	1.0	0.9532
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	2.4	0.9288
AT2G29180			unknown protein		Lus10016512 [exp]	3.2	0.9310
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	4.2	0.9412
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	4.6	0.9278
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Lus10028238 [exp]	4.7	0.9157
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Lus10016781 [exp]	5.2	0.9215
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	6.6	0.9314
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	6.9	0.9348
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	9.2	0.9091

Compare expression of checked genes

Lus10001982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.