Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 337 / 2e-117 TON1B tonneau 1b (TON1b) (.1) AT3G55000 318 / 5e-110 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030297 [exp] 442 / 6e-159 AT3G55005 359 / 2e-126 tonneau 1b (TON1b) (.1) Lus10023478 [exp] 356 / 3e-125 AT3G55005 340 / 4e-119 tonneau 1b (TON1b) (.1) Lus10040360 [exp] 339 / 3e-118 AT3G55005 327 / 1e-113 tonneau 1b (TON1b) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046000 [exp] 394 / 4e-140 AT3G55005 370 / 1e-130 tonneau 1b (TON1b) (.1) Potri.010G215500 [exp] 393 / 9e-140 AT3G55005 357 / 2e-125 tonneau 1b (TON1b) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001983 pacid=23140508 polypeptide=Lus10001983 locus=Lus10001983.g ID=Lus10001983.BGIv1.0 annot-version=v1.0 ATGGACGATTACACGAGAGAGATGATGGACCTCAAGACCCTCGTCACTCGAGCACTTGAGAAGAAAGGCGTTCTCGCTAAGATCCGGGCGGAACTTAGAG CAAGCGTCTTTGAAGCAATCGAAGAGGAGGATAGAGTCATTGAAAATGATGAAGGATTGCCGCCTGCATTACTGGGTAGCTGCAATGAGCGTGCAAAACA ACTCCATGCCTCTCCTTCAGGGAGGTTATTAACTGCATTAATATGCGAGTACATGGACTGGGCACAACTAAATCACACATTAAAAGTCTATCAACCAGAG TGCAACTTGCAAAAGGATTCTTGGAAAACAGAGTTAAATGAATTCAGTAGCAAGAATGGGTATGATCTCAACAGGAATGGAGACAGTGGTCCTTTGCTTC TCGATGTACTCGAAGGATTCTTGAAGTATGAGAATCTTACTCAAGGTAGGAGCTCCGGGAGGAGAGTGTCAGAAAATGAGTCCTCATCTAACTTAGATTC AAGGAATATGCGGAGGCCCTCTTCATCATCTGTGGCTGGTGGTTTACCTCCCCTAGGAAGGCCGGGCGCATCTTCCTCATCTGACAGGAGAGCAGGGTCC TCCGTGAGTGGTTACAGAAAAGATGACTACAATTGGAGGTACAATAGTGATGAGCACCCTGATGATGTAAATCGAGCTGCAGCTGAAATTGAGAACCTTC AGTTGGACAGTAAAGCCCGGAATCTAACATCATACTGGCGGCATGCTGGAGATGGGATGGGCGATGATGATGGAAGGAGCGATCATATCTGA
AA sequence Show only first row Show all	>Lus10001983 pacid=23140508 polypeptide=Lus10001983 locus=Lus10001983.g ID=Lus10001983.BGIv1.0 annot-version=v1.0 MDDYTREMMDLKTLVTRALEKKGVLAKIRAELRASVFEAIEEEDRVIENDEGLPPALLGSCNERAKQLHASPSGRLLTALICEYMDWAQLNHTLKVYQPE CNLQKDSWKTELNEFSSKNGYDLNRNGDSGPLLLDVLEGFLKYENLTQGRSSGRRVSENESSSNLDSRNMRRPSSSSVAGGLPPLGRPGASSSSDRRAGS SVSGYRKDDYNWRYNSDEHPDDVNRAAAEIENLQLDSKARNLTSYWRHAGDGMGDDDGRSDHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	0	1
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	1.7	0.8842
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	3.3	0.8278
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	6.7	0.8420
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	7.7	0.8418
AT2G45320			unknown protein		Lus10030280 [exp]	8.0	0.8213
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	8.5	0.8363
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10020621 [exp]	8.5	0.8177
AT3G01435			Expressed protein (.1)		Lus10022634 [exp]	8.5	0.8257
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	8.6	0.7916
AT3G51150			ATP binding microtubule motor ...		Lus10033920 [exp]	9.4	0.7642

Compare expression of checked genes

Lus10001983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.