Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37250 391 / 3e-138 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 348 / 6e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 140 / 4e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63400 111 / 3e-29 ADK1 adenylate kinase 1 (.1.2) AT5G50370 110 / 1e-28 Adenylate kinase family protein (.1) AT5G35170 114 / 2e-28 adenylate kinase family protein (.1.2) AT5G47840 101 / 4e-25 AMK2 adenosine monophosphate kinase (.1) AT4G25280 89 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60180 83 / 6e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G26667 78 / 4e-17 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030296 [exp] 562 / 0 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10040358 [exp] 502 / 0 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 502 / 0 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10032057 [exp] 157 / 3e-46 AT3G01820 244 / 5e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022342 [exp] 155 / 2e-45 AT3G01820 255 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035224 [exp] 155 / 2e-45 AT3G01820 242 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016757 [exp] 110 / 1e-28 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10036326 [exp] 113 / 4e-28 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10022453 [exp] 108 / 7e-28 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046100 [exp] 436 / 1e-155 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 430 / 3e-153 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.001G333100 [exp] 155 / 1e-45 AT3G01820 249 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G093200 [exp] 135 / 3e-38 AT3G01820 227 / 3e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G095300 [exp] 114 / 5e-30 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 110 / 7e-29 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.018G113400 [exp] 112 / 9e-28 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.013G103400 [exp] 99 / 6e-24 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 97 / 3e-23 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.014G043300 [exp] 82 / 2e-18 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10001984 pacid=23140516 polypeptide=Lus10001984 locus=Lus10001984.g ID=Lus10001984.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTTTTCAGAATCTCAGAATCTTCATCGGCGCCTTTGAAAACTATCTCCAGAGCTTTCGCCTCCCGGAATTTCTCTGCCTTCAATCACGAGC CTGACCTCACAAATTCCCCGTCCTCTTTATTTCCTCAGAATCCTTCTTTGCCTCTGTGCCAAAACCCCAAGGATAAGAGCGTCCAGTGGGTGTTCCTAGG CTGCCCAGGCGTCGGGAAAGGAACTTATGCCTCTCGCTTGTCCACTCTCATCGGCGTTCCTCACATCGCCACCGGCGATCTCGTCCGTGAAGAGCTCAAT TCATACGGTCCTCTTGCCTCCCAGCTGAAGGAGATTGTCAATCAAGGGAAACTGGTTTCAGATGAAATCATAATTAACTTACTATCCAAGCGTCTTGAAG CTGGTGAAGCTAAGGGAGAATCCGGTTTCATTCTTGATGGCTTCCCCCGTACAATTAGGCAAGCGGAAATATTGGAAGGAGTCACAGACATTGATTTGGT TGTGAACCTGAAGCTTAGGGAAGAAGCTCTCCTTGCAAAATGCCTTGGTCGTAGGATTTGCAGCCAGTGTGGTGGGAACTACAATGTTGCCTGCATTGAC ATCAAGGGGGACAATGGTCAACCTGGAATCTATATGGCTGCTCTTCCTCCACCTCCACAATGCGCCGAAAAACTTATCCAACGAGCTGATGATACTGAAG AAGTCGTCAAGGCACGGTTACGCATTTACAATGAGATGAGTAAACCCTTGGAGGGGTATTACCGCAGTCGCGGGAAGCTGTTGGAGTTCAGTCTTCCAGG GGGGATACCAGAATCATGGCCGAAGCTGCTTGAAGCATTGAATCTTGAAGATCATGAAGTGGAACGCTCTGCGGCAGCTTGA
AA sequence Show only first row Show all	>Lus10001984 pacid=23140516 polypeptide=Lus10001984 locus=Lus10001984.g ID=Lus10001984.BGIv1.0 annot-version=v1.0 MAALFRISESSSAPLKTISRAFASRNFSAFNHEPDLTNSPSSLFPQNPSLPLCQNPKDKSVQWVFLGCPGVGKGTYASRLSTLIGVPHIATGDLVREELN SYGPLASQLKEIVNQGKLVSDEIIINLLSKRLEAGEAKGESGFILDGFPRTIRQAEILEGVTDIDLVVNLKLREEALLAKCLGRRICSQCGGNYNVACID IKGDNGQPGIYMAALPPPPQCAEKLIQRADDTEEVVKARLRIYNEMSKPLEGYYRSRGKLLEFSLPGGIPESWPKLLEALNLEDHEVERSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10001984 [exp]	0	1
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	1.4	0.8420
AT3G02100			UDP-Glycosyltransferase superf...		Lus10040533 [exp]	1.7	0.7845
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	9.9	0.6791
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	16.9	0.8034
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	17.0	0.7806
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10004011 [exp]	19.9	0.7381
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	22.2	0.7418
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	26.0	0.7547
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	26.2	0.7722
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	27.4	0.7755

Compare expression of checked genes

Lus10001984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.