Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45210 92 / 5e-24 SAUR-like auxin-responsive protein family (.1) AT3G60690 83 / 1e-20 SAUR-like auxin-responsive protein family (.1) AT4G22620 72 / 3e-16 SAUR-like auxin-responsive protein family (.1) AT2G21210 60 / 3e-12 SAUR-like auxin-responsive protein family (.1) AT4G12410 61 / 4e-12 SAUR-like auxin-responsive protein family (.1) AT4G00880 59 / 1e-11 SAUR-like auxin-responsive protein family (.1) AT2G46690 56 / 1e-10 SAUR-like auxin-responsive protein family (.1) AT4G34800 54 / 3e-10 SAUR-like auxin-responsive protein family (.1) AT4G38840 54 / 4e-10 SAUR-like auxin-responsive protein family (.1) AT4G34810 54 / 5e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030295 [exp] 222 / 3e-75 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 107 / 1e-29 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 100 / 9e-27 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10032237 [exp] 64 / 6e-13 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10024600 [exp] 64 / 7e-13 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10012182 [exp] 62 / 8e-13 AT4G34800 86 / 1e-22 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 62 / 1e-12 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007563 [exp] 62 / 1e-12 AT4G34800 87 / 2e-23 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 60 / 1e-11 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066900 [exp] 100 / 2e-27 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 89 / 1e-22 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.003G113100 [exp] 73 / 2e-16 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 63 / 9e-13 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 59 / 1e-11 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 58 / 2e-11 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 58 / 2e-11 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 57 / 3e-11 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G126500 [exp] 54 / 3e-10 AT5G18020 124 / 1e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 54 / 5e-10 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10001985 pacid=23140515 polypeptide=Lus10001985 locus=Lus10001985.g ID=Lus10001985.BGIv1.0 annot-version=v1.0 ATGAGAAAGTTCAGGGGATTCAGATTAAGCAAGGGAATTATCCGATTAACCAACTGGGTCTTCAGCCAGAGGCAACAGAGGAACCGATCCCTCTACAACC GCCTCATTTCCGGCGGCGACGGCGGCAGCGATTCCCCAAGGCCGATTACTAACAGGATCAGAAAGTGGGGCCTCCGATTAGCCCAATCGATTCGCAACCC GAGCCGCAGGTTCGGTTCTGGTTATGAACCGGTTCCGGTTCCGAAGGGTCAACTGGCGGTATACGTCGGTCAAAAGGGTGACGGCGGCGATGTGTGTCGG AGGGTGTTGGTTCCGGTGATATACATTAATCATCCTCTGTTCGGCGAGCTGCTGAAGGGAGCACAGGAAGAGTACGGTTTCGGTCACCGCCGGCAGTTCT TCCCGGCGGCGGTGATGATGACGATGACGATAAAGATTTTAGTGTTCTGTTTCCGGATTTCTCGCAATTGTACAAGGGATGTGTAA
AA sequence Show only first row Show all	>Lus10001985 pacid=23140515 polypeptide=Lus10001985 locus=Lus10001985.g ID=Lus10001985.BGIv1.0 annot-version=v1.0 MRKFRGFRLSKGIIRLTNWVFSQRQQRNRSLYNRLISGGDGGSDSPRPITNRIRKWGLRLAQSIRNPSRRFGSGYEPVPVPKGQLAVYVGQKGDGGDVCR RVLVPVIYINHPLFGELLKGAQEEYGFGHRRQFFPAAVMMTMTIKILVFCFRISRNCTRDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	0	1
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	1.0	0.9141
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	2.8	0.8464
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	3.0	0.8551
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	5.5	0.8756
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	9.4	0.8353
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	11.5	0.8169
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	11.6	0.8452
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	12.0	0.8406
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	12.4	0.8246
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	14.8	0.8239

Compare expression of checked genes

Lus10001985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.